Non-Coding RNA Search

Ss1.1-rnbm15b_p14.5

Sequence:


               
               AACCATGGAGGGCGCAGATGTCAAAGAGAAGAAAAAGAAGGTTCCTGCTGTGCCAGAAAC
CCTTAAGAAAAAGCGAAAGAATTTCGCAGAGCTTAGGATTAAGCGCCTGAGAAAGAAGTT
TGCCCAGAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTACGAAAAAGCCAAGCACTA
TCACAAGGAATACAGGCAAATGTACAGAACTGAGATTCGAATGGCTAGGATGGCAAGAAA
AGCTGGCAACTTCTATGTACCTGCGGAACCCAAATTGGCATTTGTCATCAGGATCAGAGG
TATCAATGGTGTGAGCCCAAAGGTCAGAAAGGTGTTGCAGCTTCTTCGCCTCCGTCAGAT
CTTTAATGGCACCTTTGTGAAGCTCAACAAGGCTTCAATTAACATGCTGAGAATTGTGGA
ACCATATATCGCCTGGGGGTATCCAAACCTGAAGTCAGTAAATGAATTGATCTACAAGCG
TGGTTACGGCAAAATCAACAAGAAGCGAATTGCCCTGACAGATAACGCATTGATTGCTCG
TTCTCTTGGTAAATACGGCATCATCTGCATGGAGGATCTGATTCATGAGATCTATACTGT
TGGAAAACGTTTCAAAGAAGCAAACAACTTCCTGTGGCCCTTCAAATTGTCTTCTCCACG
AGGTGGAATGAAGAAAAAGACCACCCATTTTGTAGAAGGGGGAGATGCTGGCAACAGGGA
AGACCAGATCAACAGACTTATTAGAAGGATGAATTAAGGTATCTCCATGATTATTTTTGT
AATCTGGTCAATTAATAAATGGTGACTGCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCATGGAGGGCGCAGATGTCAAAGAGAAGAAAAAGAAGGTTCCTGCTGTGCCAGAAAC
CCTTAAGAAAAAGCGAAAGAATTTCGCAGAGCTTAGGATTAAGCGCCTGAGAAAGAAGTT
TGCCCAGAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTACGAAAAAGCCAAGCACTA
TCACAAGGAATACAGGCAAATGTACAGAACTGAGATTCGAATGGCTAGGATGGCAAGAAA
AGCTGGCAACTTCTATGTACCTGCGGAACCCAAATTGGCATTTGTCATCAGGATCAGAGG
TATCAATGGTGTGAGCCCAAAGGTCAGAAAGGTGTTGCAGCTTCTTCGCCTCCGTCAGAT
CTTTAATGGCACCTTTGTGAAGCTCAACAAGGCTTCAATTAACATGCTGAGAATTGTGGA
ACCATATATCGCCTGGGGGTATCCAAACCTGAAGTCAGTAAATGAATTGATCTACAAGCG
TGGTTACGGCAAAATCAACAAGAAGCGAATTGCCCTGACAGATAACGCATTGATTGCTCG
TTCTCTTGGTAAATACGGCATCATCTGCATGGAGGATCTGATTCATGAGATCTATACTGT
TGGAAAACGTTTCAAAGAAGCAAACAACTTCCTGTGGCCCTTCAAATTGTCTTCTCCACG
AGGTGGAATGAAGAAAAAGACCACCCATTTTGTAGAAGGGGGAGATGCTGGCAACAGGGA
AGACCAGATCAACAGACTTATTAGAAGGATGAATTAAGGTATCTCCATGATTATTTTTGT
AATCTGGTCAATTAATAAATGGTGACTGCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q58DT1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58DT1_BOVIN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-98, - strand, RNAz p=0.959195
               

               
               52-736, - strand, RNAz p=0.618126
               

               
               571-730, + strand, RNAz p=0.735317

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-98, - strand, RNAz p=0.959195
               

               
               52-736, - strand, RNAz p=0.618126
               

               
               571-730, + strand, RNAz p=0.735317

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-840, gnl|bosTau2|chr4 (5191622-5190804)
               

               
               1-840, gnl|Hg17|chr1 (96857201-96856367)
               

               
               1-840, gnl|Mm7|chr11 (46684567-46685476)
               


               
               52-838, gnl|bosTau2|chr10 (55100570-55101346)
               

               
               52-838, gnl|Hg17|chr1 (96857148-96856379)
               

               
               52-838, gnl|Mm7|chr11 (46684678-46685461)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr4 (5191622-5190804)
               

               
               1-840, gnl|Hg17|chr1 (96857201-96856367)
               

               
               1-840, gnl|Mm7|chr11 (46684567-46685476)
               


               
               52-838, gnl|bosTau2|chr10 (55100570-55101346)
               

               
               52-838, gnl|Hg17|chr1 (96857148-96856379)
               

               
               52-838, gnl|Mm7|chr11 (46684678-46685461)

Expressed library(ies): 85 entry(ies)

More info

Expressed library(ies): 85 entry(ies)

Help | Less info


               
               lyg (5.0579)
               

               
               bla (4.84954)
               

               
               ova (4.51963)
               

               
               mgp (4.15225)
               

               
               cmu (3.91426)
               

               
               tra (3.69276)
               

               
               sug (3.69145)
               

               
               ski (3.66838)
               

               
               pgl (3.5545)
               

               
               csk (3.51865)
               

               
               sag (3.47159)
               

               
               spl (3.43643)
               

               
               mga (3.36431)
               

               
               vin (3.32557)
               

               
               aor (3.31966)
               

               
               thg (3.29656)
               

               
               rec (3.28834)
               

               
               nca (3.28497)
               

               
               tbr (3.08356)
               

               
               sme (3.05437)
               

               
               med (3.02255)
               

               
               ssp (2.98143)
               

               
               ret (2.83213)
               

               
               sin (2.62421)
               

               
               ldo (2.61907)
               

               
               gul (2.48624)
               

               
               eru (2.28091)
               

               
               lnt (2.27693)
               

               
               eje (2.27318)
               

               
               jca (2.16524)
               

               
               ste (2.16333)
               

               
               amn (2.08855)
               

               
               isp (1.95489)
               

               
               nco (1.94081)
               

               
               sto (1.79824)
               

               
               liv (1.75541)
               

               
               pty (1.71257)
               

               
               pan (1.65172)
               

               
               bfe (1.64843)
               

               
               hea (1.63599)
               

               
               fat (1.6217)
               

               
               spc (1.58712)
               

               
               fbs (1.57812)
               

               
               elu (1.54143)
               

               
               eye (1.53453)
               

               
               mgm (1.44274)
               

               
               fty (1.40672)
               

               
               ese (1.39152)
               

               
               jej (1.3849)
               

               
               fcc (1.38449)
               

               
               col (1.36505)
               

               
               kid (1.29735)
               

               
               nbm (1.29122)
               

               
               cbe (1.19617)
               

               
               lin (1.16482)
               

               
               ecc (1.15035)
               

               
               nlu (1.15009)
               

               
               ebs (1.06471)
               

               
               lun (1.05342)
               

               
               tes (1.03907)
               

               
               fli (1.0144)
               

               
               ill (0.877963)
               

               
               nje (0.8296)
               

               
               cov (0.792917)
               

               
               ece (0.687916)
               

               
               mcp (0.682594)
               

               
               fco (0.628832)
               

               
               cag (0.604778)
               

               
               cga (0.558191)
               

               
               nep (0.551775)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               nms (0.427716)
               

               
               hlv (0.417769)
               

               
               nmm (0.398406)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               eli (0.303628)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               mas (0.210305)
               

               
               che (0.136314)
               

               
               cly (0.120642)

Expressed library(ies): 85 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (5.0579)
               

               
               bla (4.84954)
               

               
               ova (4.51963)
               

               
               mgp (4.15225)
               

               
               cmu (3.91426)
               

               
               tra (3.69276)
               

               
               sug (3.69145)
               

               
               ski (3.66838)
               

               
               pgl (3.5545)
               

               
               csk (3.51865)
               

               
               sag (3.47159)
               

               
               spl (3.43643)
               

               
               mga (3.36431)
               

               
               vin (3.32557)
               

               
               aor (3.31966)
               

               
               thg (3.29656)
               

               
               rec (3.28834)
               

               
               nca (3.28497)
               

               
               tbr (3.08356)
               

               
               sme (3.05437)
               

               
               med (3.02255)
               

               
               ssp (2.98143)
               

               
               ret (2.83213)
               

               
               sin (2.62421)
               

               
               ldo (2.61907)
               

               
               gul (2.48624)
               

               
               eru (2.28091)
               

               
               lnt (2.27693)
               

               
               eje (2.27318)
               

               
               jca (2.16524)
               

               
               ste (2.16333)
               

               
               amn (2.08855)
               

               
               isp (1.95489)
               

               
               nco (1.94081)
               

               
               sto (1.79824)
               

               
               liv (1.75541)
               

               
               pty (1.71257)
               

               
               pan (1.65172)
               

               
               bfe (1.64843)
               

               
               hea (1.63599)
               

               
               fat (1.6217)
               

               
               spc (1.58712)
               

               
               fbs (1.57812)
               

               
               elu (1.54143)
               

               
               eye (1.53453)
               

               
               mgm (1.44274)
               

               
               fty (1.40672)
               

               
               ese (1.39152)
               

               
               jej (1.3849)
               

               
               fcc (1.38449)
               

               
               col (1.36505)
               

               
               kid (1.29735)
               

               
               nbm (1.29122)
               

               
               cbe (1.19617)
               

               
               lin (1.16482)
               

               
               ecc (1.15035)
               

               
               nlu (1.15009)
               

               
               ebs (1.06471)
               

               
               lun (1.05342)
               

               
               tes (1.03907)
               

               
               fli (1.0144)
               

               
               ill (0.877963)
               

               
               nje (0.8296)
               

               
               cov (0.792917)
               

               
               ece (0.687916)
               

               
               mcp (0.682594)
               

               
               fco (0.628832)
               

               
               cag (0.604778)
               

               
               cga (0.558191)
               

               
               nep (0.551775)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               nms (0.427716)
               

               
               hlv (0.417769)
               

               
               nmm (0.398406)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               eli (0.303628)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               mas (0.210305)
               

               
               che (0.136314)
               

               
               cly (0.120642)

	1-98, - strand, RNAz p=0.959195
	52-736, - strand, RNAz p=0.618126
	571-730, + strand, RNAz p=0.735317

	1-840, gnl\|bosTau2\|chr4 (5191622-5190804)
	1-840, gnl\|Hg17\|chr1 (96857201-96856367)
	1-840, gnl\|Mm7\|chr11 (46684567-46685476)

	52-838, gnl\|bosTau2\|chr10 (55100570-55101346)
	52-838, gnl\|Hg17\|chr1 (96857148-96856379)
	52-838, gnl\|Mm7\|chr11 (46684678-46685461)

	lyg (5.0579)
	bla (4.84954)
	ova (4.51963)
	mgp (4.15225)
	cmu (3.91426)
	tra (3.69276)
	sug (3.69145)
	ski (3.66838)
	pgl (3.5545)
	csk (3.51865)
	sag (3.47159)
	spl (3.43643)
	mga (3.36431)
	vin (3.32557)
	aor (3.31966)
	thg (3.29656)
	rec (3.28834)
	nca (3.28497)
	tbr (3.08356)
	sme (3.05437)
	med (3.02255)
	ssp (2.98143)
	ret (2.83213)
	sin (2.62421)
	ldo (2.61907)
	gul (2.48624)
	eru (2.28091)
	lnt (2.27693)
	eje (2.27318)
	jca (2.16524)
	ste (2.16333)
	amn (2.08855)
	isp (1.95489)
	nco (1.94081)
	sto (1.79824)
	liv (1.75541)
	pty (1.71257)
	pan (1.65172)
	bfe (1.64843)
	hea (1.63599)
	fat (1.6217)
	spc (1.58712)
	fbs (1.57812)
	elu (1.54143)
	eye (1.53453)
	mgm (1.44274)
	fty (1.40672)
	ese (1.39152)
	jej (1.3849)
	fcc (1.38449)
	col (1.36505)
	kid (1.29735)
	nbm (1.29122)
	cbe (1.19617)
	lin (1.16482)
	ecc (1.15035)
	nlu (1.15009)
	ebs (1.06471)
	lun (1.05342)
	tes (1.03907)
	fli (1.0144)
	ill (0.877963)
	nje (0.8296)
	cov (0.792917)
	ece (0.687916)
	mcp (0.682594)
	fco (0.628832)
	cag (0.604778)
	cga (0.558191)
	nep (0.551775)
	fce (0.543183)
	ton (0.526501)
	pro (0.512033)
	fhi (0.508733)
	nms (0.427716)
	hlv (0.417769)
	nmm (0.398406)
	cut (0.339847)
	cki (0.330469)
	eli (0.303628)
	hyp (0.285673)
	ute (0.265569)
	mas (0.210305)
	che (0.136314)
	cly (0.120642)