Ss1.1-rnbm18b_i7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGGAGGGCTGTGACGTGTGCACCTGCACAGACCTGGAGGATGCCGTGATGGGCCTGC GCGTGGCCCAGTGCGCTCAGAAGCCCTGTGAAGACAGCTGCCGGCCGGGCTTCACTTACG TCCTCCACGAAGGCGAGTGCTGTGGGAAGTGCCTGCCGTCTGCCTGCAAGGTGGTGATCG GCTCCTTTCGGGGAGACTCCGTCTCTTATTGGAAGAGTGTTGGCTCACACTGGGCCTCCC CCGAGAACCCCTGCCTCATCAACGAGTGTGTCCGGGTCAAGGAGGAGGTCTTTGTGCAAC AGAGGAATGTCTCCTGCCCAATGCTGGACGTCCCTACCTGCCCTGTGGGCTTCCAGCTGA GCTGCAAGACCTCGGGCTGTTGCCCCACCTGTCGCTGTGAGCCCGTGGAGGCCTGTCTAC TCAACGGCACCATCATTGGGGCTGGGGAGAGTCTGATGATTGATGTATGCACGACCTGCC GCTGCATGCTCCAGGAGGGGGTCGTCTTTGGATTCAAGCTGGAGTGCAAGAAGACCACCT GTGAGGCCTGCCCCCTGGGATACAAGGAAGAGAAGATGCCGGGGGAATGCTGCGGGAGAT GCCTGCCTACGGCTTGCACCATTCAGCTACGAGGGGGACAGATCATGACACTGAAGCGCG ATGAGACGCTCCAGGATGGCTGTGACAGTCACTTCTGCAGGGTCAACGAGAGAGGCGAGT ACATCTGGGAGAAGAGGATCACGGGCTGCCCACCTTTTGATCAACACAAATGTCTGGCTG CGGGGGGGAAAATCATGAAAATTCCAGGCACATGCTGTGACACATGTGAGGAGCCCGAGT GCAAGGACATGACGGCCAGGCTGCAGTACGTCAAGGTGGGAAACTGCCGGTCTGAAGAGG AGGTGGACATTCATTACTGCCAGGGAAAATGCACCAGCAAAGCCGTGTACTCCATCGACA CCGAGGACGTGGAGGACCAGTGTGCCTGCTGCTCGCCCACGCGGACAGAACCCATGCAGG TGCCCCTGCGCTGCACCAACGGCTCCACCATCTACCACGAGGTCCTCAACGCCATCCAGT GCAAGTGCTCCCCCAGGAAATGCAGCAAGTGAGGCGCTGCCCCGAGTGGACTCCCGCTGC CACCCGCCTTGGCGACCCCTGCCCTGCGCATGCGCGCTCTGCTCCAGTAGCCTCCTGGGC CCACAATAAAGGCCGAGTTGTGTCCTCTTGCCCATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGGAGGGCTGTGACGTGTGCACCTGCACAGACCTGGAGGATGCCGTGATGGGCCTGC GCGTGGCCCAGTGCGCTCAGAAGCCCTGTGAAGACAGCTGCCGGCCGGGCTTCACTTACG TCCTCCACGAAGGCGAGTGCTGTGGGAAGTGCCTGCCGTCTGCCTGCAAGGTGGTGATCG GCTCCTTTCGGGGAGACTCCGTCTCTTATTGGAAGAGTGTTGGCTCACACTGGGCCTCCC CCGAGAACCCCTGCCTCATCAACGAGTGTGTCCGGGTCAAGGAGGAGGTCTTTGTGCAAC AGAGGAATGTCTCCTGCCCAATGCTGGACGTCCCTACCTGCCCTGTGGGCTTCCAGCTGA GCTGCAAGACCTCGGGCTGTTGCCCCACCTGTCGCTGTGAGCCCGTGGAGGCCTGTCTAC TCAACGGCACCATCATTGGGGCTGGGGAGAGTCTGATGATTGATGTATGCACGACCTGCC GCTGCATGCTCCAGGAGGGGGTCGTCTTTGGATTCAAGCTGGAGTGCAAGAAGACCACCT GTGAGGCCTGCCCCCTGGGATACAAGGAAGAGAAGATGCCGGGGGAATGCTGCGGGAGAT GCCTGCCTACGGCTTGCACCATTCAGCTACGAGGGGGACAGATCATGACACTGAAGCGCG ATGAGACGCTCCAGGATGGCTGTGACAGTCACTTCTGCAGGGTCAACGAGAGAGGCGAGT ACATCTGGGAGAAGAGGATCACGGGCTGCCCACCTTTTGATCAACACAAATGTCTGGCTG CGGGGGGGAAAATCATGAAAATTCCAGGCACATGCTGTGACACATGTGAGGAGCCCGAGT GCAAGGACATGACGGCCAGGCTGCAGTACGTCAAGGTGGGAAACTGCCGGTCTGAAGAGG AGGTGGACATTCATTACTGCCAGGGAAAATGCACCAGCAAAGCCGTGTACTCCATCGACA CCGAGGACGTGGAGGACCAGTGTGCCTGCTGCTCGCCCACGCGGACAGAACCCATGCAGG TGCCCCTGCGCTGCACCAACGGCTCCACCATCTACCACGAGGTCCTCAACGCCATCCAGT GCAAGTGCTCCCCCAGGAAATGCAGCAAGTGAGGCGCTGCCCCGAGTGGACTCCCGCTGC CACCCGCCTTGGCGACCCCTGCCCTGCGCATGCGCGCTCTGCTCCAGTAGCCTCCTGGGC CCACAATAAAGGCCGAGTTGTGTCCTCTTGCCCATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 280-397, - strand, RNAz p=0.801022 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 280-397, - strand, RNAz p=0.801022 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr5 (61483441-61483334) | |
| 1-108, gnl|Hg17|chr12 (5955644-5955537) | |
| 1-108, gnl|Mm7|chr6 (125690309-125690416) | |
| 219-397, gnl|bosTau2|chr5 (61478007-61477829) | |
| 219-397, gnl|canFam2|chr27 (41988542-41988399) | |
| 219-397, gnl|danRer3|chr19 (18355553-18355699) | |
| 219-397, gnl|echTel1|scaffold_308287 (41743-41886) | |
| 219-397, gnl|fr1|chrUn (31116414-31116276) | |
| 219-397, gnl|galGal2|chr1 (184921464-184921608) | |
| 219-397, gnl|hg17|chr12 (5948630-5948773) | |
| 219-397, gnl|Hg17|chr12 (5948818-5948640) | |
| 219-397, gnl|loxAfr1|scaffold_50562 (4232-4375) | |
| 219-397, gnl|mm7|chr6 (125700876-125700733) | |
| 219-397, gnl|Mm7|chr6 (125700686-125700864) | |
| 219-397, gnl|monDom2|scaffold_31 (14234809-14234955) | |
| 219-397, gnl|oryCun1|scaffold_211414 (41740-41883) | |
| 219-397, gnl|panTro1|chr10 (6455342-6455485) | |
| 219-397, gnl|rheMac2|chr11 (6083735-6083878) | |
| 219-397, gnl|rn3|chr4 (162087012-162086869) | |
| 219-397, gnl|tetNig1|chr13 (3106074-3106212) | |
| 444-553, gnl|bosTau2|chr5 (61476517-61476408) | |
| 444-553, gnl|canFam2|chr27 (41989997-41989862) | |
| 444-553, gnl|danRer3|chr19 (18353725-18353847) | |
| 444-553, gnl|dasNov1|scaffold_106002 (7760-7625) | |
| 444-553, gnl|echTel1|scaffold_308287 (40211-40346) | |
| 444-553, gnl|fr1|chrUn (31116849-31116727) | |
| 444-553, gnl|hg17|chr12 (5946908-5947043) | |
| 444-553, gnl|Hg17|chr12 (5947026-5946917) | |
| 444-553, gnl|loxAfr1|scaffold_50562 (2514-2649) | |
| 444-553, gnl|mm7|chr6 (125702162-125702029) | |
| 444-553, gnl|Mm7|chr6 (125702042-125702151) | |
| 444-553, gnl|monDom2|scaffold_31 (14232130-14232265) | |
| 444-553, gnl|oryCun1|scaffold_211414 (39987-40122) | |
| 444-553, gnl|panTro1|chr10 (6453624-6453759) | |
| 444-553, gnl|rheMac2|chr11 (6082013-6082148) | |
| 444-553, gnl|rn3|chr4 (162088304-162088171) | |
| 655-789, gnl|bosTau2|chr5 (61470461-61470327) | |
| 655-789, gnl|canFam2|chr27 (41997052-41996931) | |
| 655-789, gnl|danRer3|chr19 (18348020-18348141) | |
| 655-789, gnl|echTel1|scaffold_295109 (12763-12884) | |
| 655-789, gnl|hg17|chr12 (5931808-5931929) | |
| 655-789, gnl|Hg17|chr12 (5931948-5931814) | |
| 655-789, gnl|loxAfr1|scaffold_1500 (126451-126572) | |
| 655-789, gnl|mm7|chr6 (125706452-125706331) | |
| 655-789, gnl|Mm7|chr6 (125706310-125706444) | |
| 655-789, gnl|monDom2|scaffold_31 (14224169-14224290) | |
| 655-789, gnl|oryCun1|scaffold_211414 (30993-31114) | |
| 655-789, gnl|panTro1|chr10 (6438576-6438697) | |
| 655-789, gnl|rheMac2|chr11 (6066841-6066962) | |
| 655-789, gnl|rn3|chr4 (162096735-162096614) | |
| 921-1228, gnl|bosTau2|chr5 (61466100-61465787) | |
| 921-1228, gnl|Hg17|chr12 (5928633-5928311) | |
| 921-1228, gnl|Mm7|chr6 (125709143-125709467) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr5 (61483441-61483334) | |
| 1-108, gnl|Hg17|chr12 (5955644-5955537) | |
| 1-108, gnl|Mm7|chr6 (125690309-125690416) | |
| 219-397, gnl|bosTau2|chr5 (61478007-61477829) | |
| 219-397, gnl|canFam2|chr27 (41988542-41988399) | |
| 219-397, gnl|danRer3|chr19 (18355553-18355699) | |
| 219-397, gnl|echTel1|scaffold_308287 (41743-41886) | |
| 219-397, gnl|fr1|chrUn (31116414-31116276) | |
| 219-397, gnl|galGal2|chr1 (184921464-184921608) | |
| 219-397, gnl|hg17|chr12 (5948630-5948773) | |
| 219-397, gnl|Hg17|chr12 (5948818-5948640) | |
| 219-397, gnl|loxAfr1|scaffold_50562 (4232-4375) | |
| 219-397, gnl|mm7|chr6 (125700876-125700733) | |
| 219-397, gnl|Mm7|chr6 (125700686-125700864) | |
| 219-397, gnl|monDom2|scaffold_31 (14234809-14234955) | |
| 219-397, gnl|oryCun1|scaffold_211414 (41740-41883) | |
| 219-397, gnl|panTro1|chr10 (6455342-6455485) | |
| 219-397, gnl|rheMac2|chr11 (6083735-6083878) | |
| 219-397, gnl|rn3|chr4 (162087012-162086869) | |
| 219-397, gnl|tetNig1|chr13 (3106074-3106212) | |
| 444-553, gnl|bosTau2|chr5 (61476517-61476408) | |
| 444-553, gnl|canFam2|chr27 (41989997-41989862) | |
| 444-553, gnl|danRer3|chr19 (18353725-18353847) | |
| 444-553, gnl|dasNov1|scaffold_106002 (7760-7625) | |
| 444-553, gnl|echTel1|scaffold_308287 (40211-40346) | |
| 444-553, gnl|fr1|chrUn (31116849-31116727) | |
| 444-553, gnl|hg17|chr12 (5946908-5947043) | |
| 444-553, gnl|Hg17|chr12 (5947026-5946917) | |
| 444-553, gnl|loxAfr1|scaffold_50562 (2514-2649) | |
| 444-553, gnl|mm7|chr6 (125702162-125702029) | |
| 444-553, gnl|Mm7|chr6 (125702042-125702151) | |
| 444-553, gnl|monDom2|scaffold_31 (14232130-14232265) | |
| 444-553, gnl|oryCun1|scaffold_211414 (39987-40122) | |
| 444-553, gnl|panTro1|chr10 (6453624-6453759) | |
| 444-553, gnl|rheMac2|chr11 (6082013-6082148) | |
| 444-553, gnl|rn3|chr4 (162088304-162088171) | |
| 655-789, gnl|bosTau2|chr5 (61470461-61470327) | |
| 655-789, gnl|canFam2|chr27 (41997052-41996931) | |
| 655-789, gnl|danRer3|chr19 (18348020-18348141) | |
| 655-789, gnl|echTel1|scaffold_295109 (12763-12884) | |
| 655-789, gnl|hg17|chr12 (5931808-5931929) | |
| 655-789, gnl|Hg17|chr12 (5931948-5931814) | |
| 655-789, gnl|loxAfr1|scaffold_1500 (126451-126572) | |
| 655-789, gnl|mm7|chr6 (125706452-125706331) | |
| 655-789, gnl|Mm7|chr6 (125706310-125706444) | |
| 655-789, gnl|monDom2|scaffold_31 (14224169-14224290) | |
| 655-789, gnl|oryCun1|scaffold_211414 (30993-31114) | |
| 655-789, gnl|panTro1|chr10 (6438576-6438697) | |
| 655-789, gnl|rheMac2|chr11 (6066841-6066962) | |
| 655-789, gnl|rn3|chr4 (162096735-162096614) | |
| 921-1228, gnl|bosTau2|chr5 (61466100-61465787) | |
| 921-1228, gnl|Hg17|chr12 (5928633-5928311) | |
| 921-1228, gnl|Mm7|chr6 (125709143-125709467) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| nbm (0.397298) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| cly (0.241284) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nca (0.136874) | |
| cov (0.132153) | |
| med (0.116252) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.397298) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| cly (0.241284) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nca (0.136874) | |
| cov (0.132153) | |
| med (0.116252) |