Non-Coding RNA Search

Ss1.1-rnbm19b_b23.5

Sequence:


               
               GATCAAATCAGGGGAGATGGAAGGCTCACACTGGGGCTCAAGATGTGTCTCCAAGGCCTT
TCTCAATTTCTTCCCGGGGGCGGGGGGGCAGTTAAGTCACCATGTCCCCCACCACTCTCT
GCTCAAGGCAGGGGAGATGGAGGACACAACTCAGCCCCAGAGCCCTCTCATCCCTCAGAG
GCCCCAGCAGCAGTCCTGCTGCCCTGGGCTGTCCCTCTGACCTGCAGACCTGGGGACCAC
AGATCCTGTAGCTCATACTACCTCCAGGCTCCCTCTCCTTTGCAGGCAAACAGTTGTCAT
CTTGGGAGCCCATAACATCAGGAGGTTTGAACGGACCCAGCAGCACATATCTGTGCTCAG
AGCCATCCCCACCCCAGATTCGATCAGCAGAAAAACCTGAACGATATCATGTTACTTCAG
CTGGCAAACAGAACCAGACAAAATCGATTCGTCAGGCCAGTGGCTCTGCCTCGGACCCAA
GCCAGGCTGAGTCCTGGGGCCCGGTGCACTGTGGCCGGCTGGGGCCTGGTGAGCCTGAGC
AGGAGAACAGACACACTCCAGGAAGTGCAGCTCACAGTGCAGAGGGATGGGGAGTGCCAC
CGACGCTTCAGATTCTACAACGGCCGGATAGAGATGTGTGTGGGAGATCCAAGGGAGAGA
AAGTCCGCCTTCTCGGGGGACTCCGGAGGGCCCCTCGTGTGTGGCCGGGTGGCCCAGGGC
ATTGTCTCCTATGGAAACAGACAGGGGACACCCCCAGCAGTCTTCACCAGGGTTTCCAGC
TTCCTGCCCTGGATAAGGAGAACAATGAGTCGCTTTCAACAGCGGGGCCAGGCTGAGATC
CCCCTGTGATTGACTGTCCTTCTCTGGGGCAGAGGCCAGCTCCAGGGCACTTCCAGAGGC
TTAATAAATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCAAATCAGGGGAGATGGAAGGCTCACACTGGGGCTCAAGATGTGTCTCCAAGGCCTT
TCTCAATTTCTTCCCGGGGGCGGGGGGGCAGTTAAGTCACCATGTCCCCCACCACTCTCT
GCTCAAGGCAGGGGAGATGGAGGACACAACTCAGCCCCAGAGCCCTCTCATCCCTCAGAG
GCCCCAGCAGCAGTCCTGCTGCCCTGGGCTGTCCCTCTGACCTGCAGACCTGGGGACCAC
AGATCCTGTAGCTCATACTACCTCCAGGCTCCCTCTCCTTTGCAGGCAAACAGTTGTCAT
CTTGGGAGCCCATAACATCAGGAGGTTTGAACGGACCCAGCAGCACATATCTGTGCTCAG
AGCCATCCCCACCCCAGATTCGATCAGCAGAAAAACCTGAACGATATCATGTTACTTCAG
CTGGCAAACAGAACCAGACAAAATCGATTCGTCAGGCCAGTGGCTCTGCCTCGGACCCAA
GCCAGGCTGAGTCCTGGGGCCCGGTGCACTGTGGCCGGCTGGGGCCTGGTGAGCCTGAGC
AGGAGAACAGACACACTCCAGGAAGTGCAGCTCACAGTGCAGAGGGATGGGGAGTGCCAC
CGACGCTTCAGATTCTACAACGGCCGGATAGAGATGTGTGTGGGAGATCCAAGGGAGAGA
AAGTCCGCCTTCTCGGGGGACTCCGGAGGGCCCCTCGTGTGTGGCCGGGTGGCCCAGGGC
ATTGTCTCCTATGGAAACAGACAGGGGACACCCCCAGCAGTCTTCACCAGGGTTTCCAGC
TTCCTGCCCTGGATAAGGAGAACAATGAGTCGCTTTCAACAGCGGGGCCAGGCTGAGATC
CCCCTGTGATTGACTGTCCTTCTCTGGGGCAGAGGCCAGCTCCAGGGCACTTCCAGAGGC
TTAATAAATGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822961|ref|XP_581980.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822961|ref|XP_581980.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               51-167, - strand, RNAz p=0.56136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-167, - strand, RNAz p=0.56136

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-420, gnl|bosTau2|chr21 (23832668-23832259)
               

               
               11-420, gnl|Hg17|chr14 (24114123-24113721)
               


               
               664-912, gnl|bosTau2|chr21 (23831419-23831171)
               

               
               664-912, gnl|Hg17|chr14 (24112867-24112620)
               

               
               664-912, gnl|Mm7|chr14 (50967514-50967287)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-420, gnl|bosTau2|chr21 (23832668-23832259)
               

               
               11-420, gnl|Hg17|chr14 (24114123-24113721)
               


               
               664-912, gnl|bosTau2|chr21 (23831419-23831171)
               

               
               664-912, gnl|Hg17|chr14 (24112867-24112620)
               

               
               664-912, gnl|Mm7|chr14 (50967514-50967287)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               nbm (0.0993246)

	11-420, gnl\|bosTau2\|chr21 (23832668-23832259)
	11-420, gnl\|Hg17\|chr14 (24114123-24113721)

	664-912, gnl\|bosTau2\|chr21 (23831419-23831171)
	664-912, gnl\|Hg17\|chr14 (24112867-24112620)
	664-912, gnl\|Mm7\|chr14 (50967514-50967287)