Non-Coding RNA Search

Ss1.1-rnbm21b_h10.5

Sequence:


               
               GGAAGACTACGGTGTTTTTATGGCACACAGCAGGAAAATGGGCTGCTTTTGGCAGGAGAC
ACTGGGGCCCCTAGGGAGCACAGCAGGCAGGCAGCCCTCCCATAGGGAGTGGGAAAGGAA
GCTTGTGTCCTCAGGGCAGGGCTAGGACCCCACTTCACAACTCACAGAACCAGTCTCATC
TGACTTTGGCAGCAGCATGGACACTTCTCTTAGAGTTGTTCTCTACCTCTTTGTTGCCTA
AAATAATCTTACCTTTAAGTGAAAACAAAATTACTTTTTTTGTTTTGGTCTTTTGTTAAG
TCTGAGGTTAGGAATTTTTCTTTCTTTTGAATTCTTCCTTCCATCCCCCCCCAAAAAAAA
CACCCCCAAAAAACAAAAACGAAAAAATTTCTGAAAGTTAGTGCTTTATAAGCATTCTAA
ATCCAGAAAAACTCTTTAGGCTAAGTTGCAGCCCTCTAACCTCAAAAAAGGTTTTGGATC
AGAGAGGTCAGAGTGGCTTAAGTGAAGTTGTACAGCTAATTAATTGTAGAGCTGGTGTGA
GAACCTGCATCTGTAGTGCCGAGTCAGTTATGCCTTGGTGTGCTTGGAATTCAGATTTGA
ACTCTGAATTTTTATGTATAGCTCTGTAAAATGTTCAGTGAAAAATGTTTGTTTTATTCA
GGTTGTTCTAGCCTGGCTTAAGTATGGTCCAGAATTTGGGAACCCCATAATTACCTTTGT
CTTTGGGGGGCTAGAATTAAATGGAAGGATTTGAGGCCCTGTCTGTAGTATCACATGATA
TTTTTAGAAACCTCGAACAGCTCTTCTTACCTTTCTGCTTCTTTCTTTCAGGTTCACTCT
GATTTCCCCTGGACAAGAGCTCTTAAGATGGCAGTTTGCTGGACACATGGATTTTCTTCA
GATTTATGCTTACTACCACTCTGATTGTACAGAGCCCAGAAAAGTCCCGCGGCTTCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGACTACGGTGTTTTTATGGCACACAGCAGGAAAATGGGCTGCTTTTGGCAGGAGAC
ACTGGGGCCCCTAGGGAGCACAGCAGGCAGGCAGCCCTCCCATAGGGAGTGGGAAAGGAA
GCTTGTGTCCTCAGGGCAGGGCTAGGACCCCACTTCACAACTCACAGAACCAGTCTCATC
TGACTTTGGCAGCAGCATGGACACTTCTCTTAGAGTTGTTCTCTACCTCTTTGTTGCCTA
AAATAATCTTACCTTTAAGTGAAAACAAAATTACTTTTTTTGTTTTGGTCTTTTGTTAAG
TCTGAGGTTAGGAATTTTTCTTTCTTTTGAATTCTTCCTTCCATCCCCCCCCAAAAAAAA
CACCCCCAAAAAACAAAAACGAAAAAATTTCTGAAAGTTAGTGCTTTATAAGCATTCTAA
ATCCAGAAAAACTCTTTAGGCTAAGTTGCAGCCCTCTAACCTCAAAAAAGGTTTTGGATC
AGAGAGGTCAGAGTGGCTTAAGTGAAGTTGTACAGCTAATTAATTGTAGAGCTGGTGTGA
GAACCTGCATCTGTAGTGCCGAGTCAGTTATGCCTTGGTGTGCTTGGAATTCAGATTTGA
ACTCTGAATTTTTATGTATAGCTCTGTAAAATGTTCAGTGAAAAATGTTTGTTTTATTCA
GGTTGTTCTAGCCTGGCTTAAGTATGGTCCAGAATTTGGGAACCCCATAATTACCTTTGT
CTTTGGGGGGCTAGAATTAAATGGAAGGATTTGAGGCCCTGTCTGTAGTATCACATGATA
TTTTTAGAAACCTCGAACAGCTCTTCTTACCTTTCTGCTTCTTTCTTTCAGGTTCACTCT
GATTTCCCCTGGACAAGAGCTCTTAAGATGGCAGTTTGCTGGACACATGGATTTTCTTCA
GATTTATGCTTACTACCACTCTGATTGTACAGAGCCCAGAAAAGTCCCGCGGCTTCTGAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               395-512, + strand, RNAz p=0.757519

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               395-512, + strand, RNAz p=0.757519

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_001344, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001344, +

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               202-366, gnl|bosTau2|chr10 (14448878-14449039)
               

               
               202-366, gnl|Hg17|chr14 (22104452-22104291)
               


               
               395-918, gnl|bosTau2|chr10 (14449046-14449562)
               

               
               395-918, gnl|Hg17|chr14 (22104282-22103790)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-366, gnl|bosTau2|chr10 (14448878-14449039)
               

               
               202-366, gnl|Hg17|chr14 (22104452-22104291)
               


               
               395-918, gnl|bosTau2|chr10 (14449046-14449562)
               

               
               395-918, gnl|Hg17|chr14 (22104282-22103790)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	202-366, gnl\|bosTau2\|chr10 (14448878-14449039)
	202-366, gnl\|Hg17\|chr14 (22104452-22104291)

	395-918, gnl\|bosTau2\|chr10 (14449046-14449562)
	395-918, gnl\|Hg17\|chr14 (22104282-22103790)