Non-Coding RNA Search

Ss1.1-rnbm21b_l19.5

Sequence:


               
               AGCATCCAGTGAGAAAGTGGACCAGAACGGATGGATCCTGAGCCCCAAATGTCCAGTATG
AAAATAAACATAATCTGGTGCTCTCTCTTAGTATCAAGGATCATTTAGTGGGAGACATGT
GACTCATAAAACAGGTGGTCAAATGGATTTTATTCAGGGCATTCAGAATCACTCTTGCCA
GTGGGTAGGTACAGGGTGAAGATTCCATGTATTTCCTGTGGGGTTTTTTTCCCACACAGA
GAAGGATTTACAAAGAAATCAACACTTTCTAATCACGTCCATTCCTTAATGTACATACTA
TGTCTTCAATCTCAAAGATTACGAAACTGAGGCCAATGAAACAATAATTTATGTAAGAGA
TCTATGTAAGAAATAAAAAAGATG------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------TAAATAAATAAATAAGAGGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCATCCAGTGAGAAAGTGGACCAGAACGGATGGATCCTGAGCCCCAAATGTCCAGTATG
AAAATAAACATAATCTGGTGCTCTCTCTTAGTATCAAGGATCATTTAGTGGGAGACATGT
GACTCATAAAACAGGTGGTCAAATGGATTTTATTCAGGGCATTCAGAATCACTCTTGCCA
GTGGGTAGGTACAGGGTGAAGATTCCATGTATTTCCTGTGGGGTTTTTTTCCCACACAGA
GAAGGATTTACAAAGAAATCAACACTTTCTAATCACGTCCATTCCTTAATGTACATACTA
TGTCTTCAATCTCAAAGATTACGAAACTGAGGCCAATGAAACAATAATTTATGTAAGAGA
TCTATGTAAGAAATAAAAAAGATG------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------TAAATAAATAAATAAGAGGGAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-149, gnl|bosTau2|chr23 (19788053-19788204)
               

               
               1-149, gnl|Hg17|chr6 (49681361-49681215)
               

               
               1-149, gnl|Mm7|chr17 (38880499-38880658)
               


               
               173-361, gnl|bosTau2|chr23 (19788204-19788387)
               

               
               173-361, gnl|Mm7|chr17 (38880659-38881197)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-149, gnl|bosTau2|chr23 (19788053-19788204)
               

               
               1-149, gnl|Hg17|chr6 (49681361-49681215)
               

               
               1-149, gnl|Mm7|chr17 (38880499-38880658)
               


               
               173-361, gnl|bosTau2|chr23 (19788204-19788387)
               

               
               173-361, gnl|Mm7|chr17 (38880659-38881197)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               nbm (0.0993246)

	1-149, gnl\|bosTau2\|chr23 (19788053-19788204)
	1-149, gnl\|Hg17\|chr6 (49681361-49681215)
	1-149, gnl\|Mm7\|chr17 (38880499-38880658)

	173-361, gnl\|bosTau2\|chr23 (19788204-19788387)
	173-361, gnl\|Mm7\|chr17 (38880659-38881197)