Non-Coding RNA Search

Ss1.1-rnbm21b_n22.5

Sequence:


               
               GAGAGGCACCTGCAGGATGAAGGCTCTCTCCCTCCTCTTCCTCCCAACCCTGGGGCTGCT
GGTGTGGGGCAAGTCGCTGTGTCCCGTGGATGAAGCCATCAATGAGAAGATCCGGGATGT
CGCCAGTTTCCTAATTCCTCAGGTAATTAGGAACATTGGCCTGGAATGCCGGAGTGTCAC
CTCCAGGGGGGACCTGGTCACCTGCCCCTCAGGCTTTGCTGTCACTGGGTGCACGTGTGG
CTCCGCCTGTGGCTCTTGGGACGTGCGCGCTGAGACCACCTGCCACTGCCAGTGCGCTGG
CATAGACTGGACCGGCGCTCGCTGCTGTCGCCTGAGGACGCCATAGCTAGAAGAATCTAA
GTTTGCATCTGCGCATCACTGGGCTTGGAGGCGTGGCCAGGCCCCACAGGGGTGGGGTCA
TGACTCAGAAGGGGCGGGGCCAGGCCTCTGTGGGGCAGGGCTGGAAATAAACCTTGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGCACCTGCAGGATGAAGGCTCTCTCCCTCCTCTTCCTCCCAACCCTGGGGCTGCT
GGTGTGGGGCAAGTCGCTGTGTCCCGTGGATGAAGCCATCAATGAGAAGATCCGGGATGT
CGCCAGTTTCCTAATTCCTCAGGTAATTAGGAACATTGGCCTGGAATGCCGGAGTGTCAC
CTCCAGGGGGGACCTGGTCACCTGCCCCTCAGGCTTTGCTGTCACTGGGTGCACGTGTGG
CTCCGCCTGTGGCTCTTGGGACGTGCGCGCTGAGACCACCTGCCACTGCCAGTGCGCTGG
CATAGACTGGACCGGCGCTCGCTGCTGTCGCCTGAGGACGCCATAGCTAGAAGAATCTAA
GTTTGCATCTGCGCATCACTGGGCTTGGAGGCGTGGCCAGGCCCCACAGGGGTGGGGTCA
TGACTCAGAAGGGGCGGGGCCAGGCCTCTGTGGGGCAGGGCTGGAAATAAACCTTGAGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6QR67_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6QR67_PIG

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-133, gnl|bosTau2|chr7 (12418103-12418230)
               

               
               6-133, gnl|canFam2|chr20 (55436217-55436472)
               

               
               6-133, gnl|hg17|chr19 (7640137-7640399)
               

               
               6-133, gnl|Hg17|chr19 (7640202-7640329)
               

               
               6-133, gnl|mm7|chr8 (3618366-3618621)
               

               
               6-133, gnl|Mm7|chr8 (3618417-3618556)
               

               
               6-133, gnl|monDom2|scaffold_54 (495966-495709)
               

               
               6-133, gnl|oryCun1|scaffold_203895 (34957-35203)
               

               
               6-133, gnl|panTro1|chr20 (7990737-7991000)
               

               
               6-133, gnl|rheMac2|chr19 (7624814-7625075)
               

               
               6-133, gnl|rn3|chr12 (2501189-2500947)
               


               
               205-446, gnl|bosTau2|chr7 (12418952-12419181)
               

               
               205-446, gnl|Hg17|chr19 (7641097-7641299)
               

               
               205-446, gnl|Mm7|chr8 (3619660-3619874)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-133, gnl|bosTau2|chr7 (12418103-12418230)
               

               
               6-133, gnl|canFam2|chr20 (55436217-55436472)
               

               
               6-133, gnl|hg17|chr19 (7640137-7640399)
               

               
               6-133, gnl|Hg17|chr19 (7640202-7640329)
               

               
               6-133, gnl|mm7|chr8 (3618366-3618621)
               

               
               6-133, gnl|Mm7|chr8 (3618417-3618556)
               

               
               6-133, gnl|monDom2|scaffold_54 (495966-495709)
               

               
               6-133, gnl|oryCun1|scaffold_203895 (34957-35203)
               

               
               6-133, gnl|panTro1|chr20 (7990737-7991000)
               

               
               6-133, gnl|rheMac2|chr19 (7624814-7625075)
               

               
               6-133, gnl|rn3|chr12 (2501189-2500947)
               


               
               205-446, gnl|bosTau2|chr7 (12418952-12419181)
               

               
               205-446, gnl|Hg17|chr19 (7641097-7641299)
               

               
               205-446, gnl|Mm7|chr8 (3619660-3619874)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nbm (0.595948)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.595948)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)

	6-133, gnl\|bosTau2\|chr7 (12418103-12418230)
	6-133, gnl\|canFam2\|chr20 (55436217-55436472)
	6-133, gnl\|hg17\|chr19 (7640137-7640399)
	6-133, gnl\|Hg17\|chr19 (7640202-7640329)
	6-133, gnl\|mm7\|chr8 (3618366-3618621)
	6-133, gnl\|Mm7\|chr8 (3618417-3618556)
	6-133, gnl\|monDom2\|scaffold_54 (495966-495709)
	6-133, gnl\|oryCun1\|scaffold_203895 (34957-35203)
	6-133, gnl\|panTro1\|chr20 (7990737-7991000)
	6-133, gnl\|rheMac2\|chr19 (7624814-7625075)
	6-133, gnl\|rn3\|chr12 (2501189-2500947)

	205-446, gnl\|bosTau2\|chr7 (12418952-12419181)
	205-446, gnl\|Hg17\|chr19 (7641097-7641299)
	205-446, gnl\|Mm7\|chr8 (3619660-3619874)