Non-Coding RNA Search

Ss1.1-rnbm22b_e20.5

Sequence:


               
               AGTAAGCGTTTCCGGTCATTCATTCTCCCTGCGGGTCGGCCTCTGCGGTGGGGTTTTGTG
TACTATCGGACCGAGAGGATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACT
GTAACCATTGAATTAAAGAATGGAACACAGGTCCATGGAACAATCACAGGTGTAGATGTC
AGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCAGTACAG
CTGGAAACACTGAGTATTCGAGGCAATAACATTCGATATTTTATTCTGCCGGACAGTTTA
CCTCTGGATACACTACTTGTGGATGTTGAACCGAAGGTGAAATCTAAGAAGAGGGAAGCT
GTTGCGGGAAGAGGCCGAGGCCGAGGCAGAGGAAGAGGACGTGGCCGAGGCAGAGGAAGA
GGCGGTCCTAGGCGATAATGTCTCTCAAGATTACTGTTTCAAAGGGTGGTCAGACTTTTT
TGTACAGCTTTTGTTTGTTTCTGTCAGTTTTTAATAAACATAAATGCAGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATAGTTCATGTATATTCATGATATTAACACAGTAA
GAGCTAAGCATTACTGTGAGGCAGTCCCAAGATAATTCCATTCTTTGATCAGACTTTTAA
TTTTTCAAACTAAAATGTTTCTTTTATGAATATATATAGAATATACATTTTTTTATTTCA
CATTCTCTGATTATGTGCTTTATTGTTTTACCTTGACTCCATTCTGTGGAATCTTCCTAC
AAGTGGAGTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAAGCGTTTCCGGTCATTCATTCTCCCTGCGGGTCGGCCTCTGCGGTGGGGTTTTGTG
TACTATCGGACCGAGAGGATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACT
GTAACCATTGAATTAAAGAATGGAACACAGGTCCATGGAACAATCACAGGTGTAGATGTC
AGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCAGTACAG
CTGGAAACACTGAGTATTCGAGGCAATAACATTCGATATTTTATTCTGCCGGACAGTTTA
CCTCTGGATACACTACTTGTGGATGTTGAACCGAAGGTGAAATCTAAGAAGAGGGAAGCT
GTTGCGGGAAGAGGCCGAGGCCGAGGCAGAGGAAGAGGACGTGGCCGAGGCAGAGGAAGA
GGCGGTCCTAGGCGATAATGTCTCTCAAGATTACTGTTTCAAAGGGTGGTCAGACTTTTT
TGTACAGCTTTTGTTTGTTTCTGTCAGTTTTTAATAAACATAAATGCAGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATAGTTCATGTATATTCATGATATTAACACAGTAA
GAGCTAAGCATTACTGTGAGGCAGTCCCAAGATAATTCCATTCTTTGATCAGACTTTTAA
TTTTTCAAACTAAAATGTTTCTTTTATGAATATATATAGAATATACATTTTTTTATTTCA
CATTCTCTGATTATGTGCTTTATTGTTTTACCTTGACTCCATTCTGTGGAATCTTCCTAC
AAGTGGAGTAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SMD1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               SMD1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               275-394, + strand, RNAz p=0.886717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-394, + strand, RNAz p=0.886717

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-464, gnl|bosTau2|chr25 (32152131-32152519)
               

               
               76-464, gnl|Hg17|chr1 (44257280-44256892)
               

               
               76-464, gnl|Mm7|chr2 (156909707-156910093)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-464, gnl|bosTau2|chr25 (32152131-32152519)
               

               
               76-464, gnl|Hg17|chr1 (44257280-44256892)
               

               
               76-464, gnl|Mm7|chr2 (156909707-156910093)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

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               cte (3.80562)
               

               
               sto (1.25877)
               

               
               elu (0.770713)
               

               
               fty (0.703359)
               

               
               cut (0.679694)
               

               
               ova (0.645661)
               

               
               tes (0.623441)
               

               
               rec (0.519211)
               

               
               mgp (0.461361)
               

               
               che (0.408942)
               

               
               sug (0.381874)
               

               
               eep (0.367692)
               

               
               spc (0.340097)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (3.80562)
               

               
               sto (1.25877)
               

               
               elu (0.770713)
               

               
               fty (0.703359)
               

               
               cut (0.679694)
               

               
               ova (0.645661)
               

               
               tes (0.623441)
               

               
               rec (0.519211)
               

               
               mgp (0.461361)
               

               
               che (0.408942)
               

               
               sug (0.381874)
               

               
               eep (0.367692)
               

               
               spc (0.340097)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	76-464, gnl\|bosTau2\|chr25 (32152131-32152519)
	76-464, gnl\|Hg17\|chr1 (44257280-44256892)
	76-464, gnl\|Mm7\|chr2 (156909707-156910093)

	cte (3.80562)
	sto (1.25877)
	elu (0.770713)
	fty (0.703359)
	cut (0.679694)
	ova (0.645661)
	tes (0.623441)
	rec (0.519211)
	mgp (0.461361)
	che (0.408942)
	sug (0.381874)
	eep (0.367692)
	spc (0.340097)
	cje (0.330469)
	isp (0.300752)
	csk (0.281492)
	cst (0.280073)
	eru (0.240096)
	cbe (0.239234)
	med (0.232504)
	jej (0.197844)
	aor (0.195274)
	cmu (0.186393)
	nep (0.183925)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	fat (0.147427)
	liv (0.146284)
	lnt (0.142308)
	ssp (0.13552)
	cov (0.132153)
	kid (0.129735)
	thg (0.126791)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)