Non-Coding RNA Search

Ss1.1-rnbm23b_c3.5

Sequence:


               
               AAAAGGAGAAACTTGCATTTATCCATCCTTTGCAGCTAGTTGAAGATCCATTGTCACCTG
CTCTAAGGCACAACAAACCAAGAAAAAATGATTGGCATGAAAATGAAGCTGCAATTAAAA
AAATAGCTGCCCTTGAAGATGAGCTTGCTTTTCTTCGCTCTCAGATTGCTGCAATTGTGA
GCACGCAAGAACTGAGAAACAGTACAAATTCTGGCTCCTTGGACCTGAATGACAGGCCTA
GTGGTTTGGGACAAATGGCACCATCAGAGAATACTCCACTGAGTGATGAACCAGATTCGT
TTTCAAGTTCAGTGCTTCCCGCACCCCCTCCTCCGCCACTGCCTCCTCAGTTGTCTTCTC
TGCCACCTCCATGTTCTCCTCTCCTACAACCAGCGGCTGATAATATTTGTGCATCAGATA
ATTCAGCAACTGAGGTGAAGAAACAGTACGCAGATGATAGGAAGACCACCTGCAGTCATC
GTTCAAAAAACCAGGAAAATAAAGATGTTCCAAACATGTTGGATGTACTGAAGGATATGA
ATAAGGTTAAACTTCGTGCTATCGAAAGGTCACCTGGCGGCAGACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGAGAAACTTGCATTTATCCATCCTTTGCAGCTAGTTGAAGATCCATTGTCACCTG
CTCTAAGGCACAACAAACCAAGAAAAAATGATTGGCATGAAAATGAAGCTGCAATTAAAA
AAATAGCTGCCCTTGAAGATGAGCTTGCTTTTCTTCGCTCTCAGATTGCTGCAATTGTGA
GCACGCAAGAACTGAGAAACAGTACAAATTCTGGCTCCTTGGACCTGAATGACAGGCCTA
GTGGTTTGGGACAAATGGCACCATCAGAGAATACTCCACTGAGTGATGAACCAGATTCGT
TTTCAAGTTCAGTGCTTCCCGCACCCCCTCCTCCGCCACTGCCTCCTCAGTTGTCTTCTC
TGCCACCTCCATGTTCTCCTCTCCTACAACCAGCGGCTGATAATATTTGTGCATCAGATA
ATTCAGCAACTGAGGTGAAGAAACAGTACGCAGATGATAGGAAGACCACCTGCAGTCATC
GTTCAAAAAACCAGGAAAATAAAGATGTTCCAAACATGTTGGATGTACTGAAGGATATGA
ATAAGGTTAAACTTCGTGCTATCGAAAGGTCACCTGGCGGCAGACCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61823729|ref|XP_613962.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61823729|ref|XP_613962.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               412-531, - strand, RNAz p=0.574816
               

               
               419-532, - strand, RNAz p=0.837024

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               412-531, - strand, RNAz p=0.574816
               

               
               419-532, - strand, RNAz p=0.837024

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               213-570, gnl|bosTau2|chr9 (43860750-43861107)
               

               
               213-570, gnl|canFam2|chr1 (31873075-31872796)
               

               
               213-570, gnl|dasNov1|scaffold_52187 (416-133)
               

               
               213-570, gnl|echTel1|scaffold_324942 (1227-950)
               

               
               213-570, gnl|hg17|chr22 (38471110-38471453)
               

               
               213-570, gnl|Hg17|chr6 (136602652-136602295)
               

               
               213-570, gnl|Mm7|chr10 (20081918-20082254)
               

               
               213-570, gnl|mm7|chr14 (51278603-51278328)
               

               
               213-570, gnl|monDom2|scaffold_28 (33197411-33197636)
               

               
               213-570, gnl|oryCun1|scaffold_198549 (30612-30888)
               

               
               213-570, gnl|panTro1|chr23 (38720865-38721205)
               

               
               213-570, gnl|rheMac2|chr10 (83684147-83684490)
               

               
               213-570, gnl|rn3|chr19 (38873206-38873464)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               213-570, gnl|bosTau2|chr9 (43860750-43861107)
               

               
               213-570, gnl|canFam2|chr1 (31873075-31872796)
               

               
               213-570, gnl|dasNov1|scaffold_52187 (416-133)
               

               
               213-570, gnl|echTel1|scaffold_324942 (1227-950)
               

               
               213-570, gnl|hg17|chr22 (38471110-38471453)
               

               
               213-570, gnl|Hg17|chr6 (136602652-136602295)
               

               
               213-570, gnl|Mm7|chr10 (20081918-20082254)
               

               
               213-570, gnl|mm7|chr14 (51278603-51278328)
               

               
               213-570, gnl|monDom2|scaffold_28 (33197411-33197636)
               

               
               213-570, gnl|oryCun1|scaffold_198549 (30612-30888)
               

               
               213-570, gnl|panTro1|chr23 (38720865-38721205)
               

               
               213-570, gnl|rheMac2|chr10 (83684147-83684490)
               

               
               213-570, gnl|rn3|chr19 (38873206-38873464)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	412-531, - strand, RNAz p=0.574816
	419-532, - strand, RNAz p=0.837024

	213-570, gnl\|bosTau2\|chr9 (43860750-43861107)
	213-570, gnl\|canFam2\|chr1 (31873075-31872796)
	213-570, gnl\|dasNov1\|scaffold_52187 (416-133)
	213-570, gnl\|echTel1\|scaffold_324942 (1227-950)
	213-570, gnl\|hg17\|chr22 (38471110-38471453)
	213-570, gnl\|Hg17\|chr6 (136602652-136602295)
	213-570, gnl\|Mm7\|chr10 (20081918-20082254)
	213-570, gnl\|mm7\|chr14 (51278603-51278328)
	213-570, gnl\|monDom2\|scaffold_28 (33197411-33197636)
	213-570, gnl\|oryCun1\|scaffold_198549 (30612-30888)
	213-570, gnl\|panTro1\|chr23 (38720865-38721205)
	213-570, gnl\|rheMac2\|chr10 (83684147-83684490)
	213-570, gnl\|rn3\|chr19 (38873206-38873464)