Ss1.1-rnbm23b_j1.5
|
ACATGGAAAACCATAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGCTTGCACAATTC
ATCTCCCAAAGAAACCTATGGTGCATATGCTTTGGGCAGCTTTTGAGGAACAGCAGGGCA
ATATTAATGAAGCCAGGAATATCTTGAGAACATTTGAAGAATGTGTCCTAGGACTGGCAA
TGGTTCGTTTGAGAAGAGTAAGTTTAGAACGACGGCATGGAAATATGGAAGAAGCTGAAC
GTCTGCTTCAGGATGCCATTAAGAATGCCAAAGCAAATAATGAATCATCATTTTATGCTA
TCAAACTTGCCCGACATCTTTTCAAAATACAAAAAAACCTTCCCAAATCAAGAAAGGTGC
TTTTGGAAGCAATTGAAAGAGACAAAGAGAACACAAAGTTATACCTCAATTTACTTGAAA
TGGAATACAGTGGTGACCTCAAACAAAATGAAGAAAATATCCTAAATTGTTTTGACAAAG
CTATACATGGTTCATTACCTATTAAAATGAGAATTACATTTTCTCAGAGAAAAGTGGAAT
TTCTTGAAGATTTTGGCTCAGATGTTAATAAACTTCTGAATGCTTATGATGAACATCAGA
CACTCCTAAAAGAACAAGATTCTTTAAAAAGGAAAGCAGAAAATGGGTCAGAAGAACCAG
AGGAAAAGAAAGCACACACAGAAGATACTTCATCATCTACACAGATGATTGATGGTGATT
TACAGGCAAATCAAGCTGCTTATAATTATAGTGCCTGGTATCAATACAATTATCAGAATC
CTTGGAATTATGGACAGTATTATCCTCCTCCTCCAACCTGATGGGAAAATTAATAGCAGA
TGGAGTATGTGAAAAGTATGAAATTATTTTTTTTTTAATGAGGGATGTAAACAGCATAAA
CTTGCATTTGATAACTTGTCTTCCCTGTTTCTGTGTAACATGATTTGTTTAGTAATAGGG
GAAAATGTCACTTAGTAGCTCACCACAGATACTATTTCCTACCATTTATAAAATTTACTT
TTTATTGGAGAACTATTTTTTTGATTTTTGCATTAAGTGGTCTAGAATTCTTTTGCAATG
TATTTGCAACAGAGTTTTGTAGCCTTAAGGTTAGGAAAAAACTGACTGCAAATCATGTCA
GTGTAGTTTAAGATTCTGAAAATACATAAGGGCTGGTTAATAAGGATTTACCTCCTCTTT
AAAAAAATGGATTTTTAACCCTTGCTGACAAGACTGTTTGCGTGTTTCAGTTATCCTTAT
GAATTTGGATATAACAGCAGAAAAGACACCTATTAAAATACTGTCTTGGAATAGAGATTA
TAAGTGAGGAAATGGAATGTTTGCATCCCCTTAAAAAATGAAAGTCTTATCAAAACTATG
TTGTTTCAGGAGACTTTGTATTTGGAATATTCATGTAAAACTTGTGAGCAAGCTTTCATT
TTGATCAAACTGATCATCTTCATTTTTGTAATAAAACTGAAGACTCATCTAGTAATTGTT
ATGAATTTATTTGTGGCGATCACCTAATAATACTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACATGGAAAACCATAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGCTTGCACAATTC
ATCTCCCAAAGAAACCTATGGTGCATATGCTTTGGGCAGCTTTTGAGGAACAGCAGGGCA
ATATTAATGAAGCCAGGAATATCTTGAGAACATTTGAAGAATGTGTCCTAGGACTGGCAA
TGGTTCGTTTGAGAAGAGTAAGTTTAGAACGACGGCATGGAAATATGGAAGAAGCTGAAC
GTCTGCTTCAGGATGCCATTAAGAATGCCAAAGCAAATAATGAATCATCATTTTATGCTA
TCAAACTTGCCCGACATCTTTTCAAAATACAAAAAAACCTTCCCAAATCAAGAAAGGTGC
TTTTGGAAGCAATTGAAAGAGACAAAGAGAACACAAAGTTATACCTCAATTTACTTGAAA
TGGAATACAGTGGTGACCTCAAACAAAATGAAGAAAATATCCTAAATTGTTTTGACAAAG
CTATACATGGTTCATTACCTATTAAAATGAGAATTACATTTTCTCAGAGAAAAGTGGAAT
TTCTTGAAGATTTTGGCTCAGATGTTAATAAACTTCTGAATGCTTATGATGAACATCAGA
CACTCCTAAAAGAACAAGATTCTTTAAAAAGGAAAGCAGAAAATGGGTCAGAAGAACCAG
AGGAAAAGAAAGCACACACAGAAGATACTTCATCATCTACACAGATGATTGATGGTGATT
TACAGGCAAATCAAGCTGCTTATAATTATAGTGCCTGGTATCAATACAATTATCAGAATC
CTTGGAATTATGGACAGTATTATCCTCCTCCTCCAACCTGATGGGAAAATTAATAGCAGA
TGGAGTATGTGAAAAGTATGAAATTATTTTTTTTTTAATGAGGGATGTAAACAGCATAAA
CTTGCATTTGATAACTTGTCTTCCCTGTTTCTGTGTAACATGATTTGTTTAGTAATAGGG
GAAAATGTCACTTAGTAGCTCACCACAGATACTATTTCCTACCATTTATAAAATTTACTT
TTTATTGGAGAACTATTTTTTTGATTTTTGCATTAAGTGGTCTAGAATTCTTTTGCAATG
TATTTGCAACAGAGTTTTGTAGCCTTAAGGTTAGGAAAAAACTGACTGCAAATCATGTCA
GTGTAGTTTAAGATTCTGAAAATACATAAGGGCTGGTTAATAAGGATTTACCTCCTCTTT
AAAAAAATGGATTTTTAACCCTTGCTGACAAGACTGTTTGCGTGTTTCAGTTATCCTTAT
GAATTTGGATATAACAGCAGAAAAGACACCTATTAAAATACTGTCTTGGAATAGAGATTA
TAAGTGAGGAAATGGAATGTTTGCATCCCCTTAAAAAATGAAAGTCTTATCAAAACTATG
TTGTTTCAGGAGACTTTGTATTTGGAATATTCATGTAAAACTTGTGAGCAAGCTTTCATT
TTGATCAAACTGATCATCTTCATTTTTGTAATAAAACTGAAGACTCATCTAGTAATTGTT
ATGAATTTATTTGTGGCGATCACCTAATAATACTAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
117-387, gnl|bosTau2|chr21 (37209988-37210258) |
|
117-387, gnl|canFam2|chr8 (25549417-25549729) |
|
117-387, gnl|danRer3|chr17 (46785253-46785558) |
|
117-387, gnl|echTel1|scaffold_319350 (33966-34277) |
|
117-387, gnl|fr1|chrUn (51718267-51717982) |
|
117-387, gnl|galGal2|chr5 (55472519-55472239) |
|
117-387, gnl|hg17|chr14 (44649465-44649777) |
|
117-387, gnl|Hg17|chr14 (44649501-44649771) |
|
117-387, gnl|loxAfr1|scaffold_14634 (17745-17433) |
|
117-387, gnl|mm7|chr12 (62995305-62995616) |
|
117-387, gnl|Mm7|chr12 (62995340-62995610) |
|
117-387, gnl|monDom2|scaffold_8 (66661024-66660726) |
|
117-387, gnl|oryCun1|scaffold_188616 (51482-51170) |
|
117-387, gnl|panTro1|chr15 (43906510-43906822) |
|
117-387, gnl|rheMac2|chr7 (108281888-108282200) |
|
117-387, gnl|rn3|chr6 (86408668-86408979) |
|
117-387, gnl|tetNig1|chr14 (7091993-7092277) |
|
117-387, gnl|xenTro1|scaffold_1227 (111824-112138) |
| |
|
761-1527, gnl|bosTau2|chr21 (37216972-37217748) |
|
761-1527, gnl|Hg17|chr14 (44653806-44654597) |
|
761-1527, gnl|Mm7|chr12 (63000510-63001283) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
117-387, gnl|bosTau2|chr21 (37209988-37210258) |
|
117-387, gnl|canFam2|chr8 (25549417-25549729) |
|
117-387, gnl|danRer3|chr17 (46785253-46785558) |
|
117-387, gnl|echTel1|scaffold_319350 (33966-34277) |
|
117-387, gnl|fr1|chrUn (51718267-51717982) |
|
117-387, gnl|galGal2|chr5 (55472519-55472239) |
|
117-387, gnl|hg17|chr14 (44649465-44649777) |
|
117-387, gnl|Hg17|chr14 (44649501-44649771) |
|
117-387, gnl|loxAfr1|scaffold_14634 (17745-17433) |
|
117-387, gnl|mm7|chr12 (62995305-62995616) |
|
117-387, gnl|Mm7|chr12 (62995340-62995610) |
|
117-387, gnl|monDom2|scaffold_8 (66661024-66660726) |
|
117-387, gnl|oryCun1|scaffold_188616 (51482-51170) |
|
117-387, gnl|panTro1|chr15 (43906510-43906822) |
|
117-387, gnl|rheMac2|chr7 (108281888-108282200) |
|
117-387, gnl|rn3|chr6 (86408668-86408979) |
|
117-387, gnl|tetNig1|chr14 (7091993-7092277) |
|
117-387, gnl|xenTro1|scaffold_1227 (111824-112138) |
| |
|
761-1527, gnl|bosTau2|chr21 (37216972-37217748) |
|
761-1527, gnl|Hg17|chr14 (44653806-44654597) |
|
761-1527, gnl|Mm7|chr12 (63000510-63001283) |
|
liv (0.585137) |
|
kid (0.389206) |
|
tra (0.369276) |
|
lin (0.291206) |
|
sag (0.182715) |
|
eye (0.170503) |
|
eli (0.151814) |
|
lun (0.150489) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
liv (0.585137) |
|
kid (0.389206) |
|
tra (0.369276) |
|
lin (0.291206) |
|
sag (0.182715) |
|
eye (0.170503) |
|
eli (0.151814) |
|
lun (0.150489) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
