Non-Coding RNA Search

Ss1.1-rnbm24b_g15.5.5

Sequence:


               
               AGCCCTTCACCCCCAGGCTGCGCTGCCCTGGGGGCCCCCGGAGCCCCTCCCTAGACTGGG
GGAGCAGCAGATGGCAAGAATCATGGCCAGCTCCCTAGAGCTGGTCAGTGGCACCAGGGC
TGCCCATTCCTCCGGCTCTGCCTCCTCTCTCCGCTGGTATAAGGGGGGTTGCTTCTGTCT
TAGAGAAGGGACCCAGGGCCCTGGCACCCCACGCTGATATGGAGACCCCAGCTCTCGGAA
GCCCAGCCAGGCCGGGTGAGCAGGCAGCTGTGCCAAACTACCTCACGGGCCCACACTCTG
CCTGCCACGCCATGGATCATGGGCAGGAAAGGCTCTGGGGGCAGAAACGCCACTCCCTGG
TCACCCCCCACACACCTCCCCCTCACCCAGAACAGCCTGAGGGTCCCTGGGGCTCTGGAG
AGAGCAGAATCGGGGAGGAGGGACTGGCCCCTCATAGGAAAGGAAACCAGCACATCTCCG
TTATCCTGGAGGCGTGCAAAAAGTGCTTTAAGTGGTTGGCATGGGACTAGGGGGTGGAGA
GCAGGGCCCCCCACCCCTCAGCTCTCTCACACCCTCCTTCCCCAAGTGATGTTTGCCGCC
TTGTCACCAGCGATGGGACCCGTCCTGTCACACCCTCCCCCGAGAAAGCATGGGGACCCC
AGGCCTCCCTGTGCCCATCCACAGACAGGCTGTGGCCCAGCCTATGCCACCGGCCCGGCC
CCACGCAGCTCCCGATGTGCTCGCTCACGTGTGTGCGTGTCTGTGTGTGTGCGCGTCTGT
GTCCGTTGCTGTGTCGTGAAGCTGTGCCCGTCCCCCGTCCCAACAAGCGAATGGCCGCCA
AGGCCGCAGTTATGCAACTTTCAGTGTGTGTCGTGACAGCGTCACTGCTTTTTAAACTCG
ATAACTCTTTATTTTAGTAAAATGCCCCCAAGAGTCCACAAAACTCCTGCTGGACTTGCA
GAGGTTTTATTTTTTTGGCCTTAGAATCTGCAGGAATTAGAGGTACTGACCCCAGTGCGG
CAGCCTTGGCCCTGGATTGCGTTTGCCTTAGCGAATATGTTTATACAGATGAATATAAAA
AGTTCTTTTTCTTTGGGCTCATTTGCTTTTTTTTTTTTTTTTTCTTTCCTCCCTTCTCAC
CCAAAAAAGAAAAAAAAAAAAAAAGACTACTTCTTCATTCAGTGGTACGATTATTTTTTT
TAACTAAAATAAGATAAAATTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCTTCACCCCCAGGCTGCGCTGCCCTGGGGGCCCCCGGAGCCCCTCCCTAGACTGGG
GGAGCAGCAGATGGCAAGAATCATGGCCAGCTCCCTAGAGCTGGTCAGTGGCACCAGGGC
TGCCCATTCCTCCGGCTCTGCCTCCTCTCTCCGCTGGTATAAGGGGGGTTGCTTCTGTCT
TAGAGAAGGGACCCAGGGCCCTGGCACCCCACGCTGATATGGAGACCCCAGCTCTCGGAA
GCCCAGCCAGGCCGGGTGAGCAGGCAGCTGTGCCAAACTACCTCACGGGCCCACACTCTG
CCTGCCACGCCATGGATCATGGGCAGGAAAGGCTCTGGGGGCAGAAACGCCACTCCCTGG
TCACCCCCCACACACCTCCCCCTCACCCAGAACAGCCTGAGGGTCCCTGGGGCTCTGGAG
AGAGCAGAATCGGGGAGGAGGGACTGGCCCCTCATAGGAAAGGAAACCAGCACATCTCCG
TTATCCTGGAGGCGTGCAAAAAGTGCTTTAAGTGGTTGGCATGGGACTAGGGGGTGGAGA
GCAGGGCCCCCCACCCCTCAGCTCTCTCACACCCTCCTTCCCCAAGTGATGTTTGCCGCC
TTGTCACCAGCGATGGGACCCGTCCTGTCACACCCTCCCCCGAGAAAGCATGGGGACCCC
AGGCCTCCCTGTGCCCATCCACAGACAGGCTGTGGCCCAGCCTATGCCACCGGCCCGGCC
CCACGCAGCTCCCGATGTGCTCGCTCACGTGTGTGCGTGTCTGTGTGTGTGCGCGTCTGT
GTCCGTTGCTGTGTCGTGAAGCTGTGCCCGTCCCCCGTCCCAACAAGCGAATGGCCGCCA
AGGCCGCAGTTATGCAACTTTCAGTGTGTGTCGTGACAGCGTCACTGCTTTTTAAACTCG
ATAACTCTTTATTTTAGTAAAATGCCCCCAAGAGTCCACAAAACTCCTGCTGGACTTGCA
GAGGTTTTATTTTTTTGGCCTTAGAATCTGCAGGAATTAGAGGTACTGACCCCAGTGCGG
CAGCCTTGGCCCTGGATTGCGTTTGCCTTAGCGAATATGTTTATACAGATGAATATAAAA
AGTTCTTTTTCTTTGGGCTCATTTGCTTTTTTTTTTTTTTTTTCTTTCCTCCCTTCTCAC
CCAAAAAAGAAAAAAAAAAAAAAAGACTACTTCTTCATTCAGTGGTACGATTATTTTTTT
TAACTAAAATAAGATAAAATTCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               192-341, + strand, RNAz p=0.999232

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-341, + strand, RNAz p=0.999232

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               204-292, - strand, RNAmicro p=0.990195

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               204-292, - strand, RNAmicro p=0.990195

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               192-511, gnl|bosTau2|chr16 (38705556-38705862)
               

               
               192-511, gnl|Hg17|chr1 (15501145-15501449)
               

               
               192-511, gnl|Mm7|chr4 (141237706-141237399)
               


               
               667-1224, gnl|bosTau2|chr16 (38706084-38706623)
               

               
               667-1224, gnl|Hg17|chr1 (15501594-15502133)
               

               
               667-1224, gnl|Mm7|chr4 (141237360-141236781)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-511, gnl|bosTau2|chr16 (38705556-38705862)
               

               
               192-511, gnl|Hg17|chr1 (15501145-15501449)
               

               
               192-511, gnl|Mm7|chr4 (141237706-141237399)
               


               
               667-1224, gnl|bosTau2|chr16 (38706084-38706623)
               

               
               667-1224, gnl|Hg17|chr1 (15501594-15502133)
               

               
               667-1224, gnl|Mm7|chr4 (141237360-141236781)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

Help | Less info


               
               cut (1.35939)
               

               
               cst (1.26033)
               

               
               cje (0.826173)
               

               
               cmu (0.745573)
               

               
               cki (0.660939)
               

               
               csp (0.644745)
               

               
               mga (0.480615)
               

               
               che (0.408942)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               nlu (0.383362)
               

               
               ese (0.379507)
               

               
               bla (0.373042)
               

               
               cly (0.361925)
               

               
               sto (0.359648)
               

               
               clu (0.358938)
               

               
               ton (0.351)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               cty (0.20816)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (1.35939)
               

               
               cst (1.26033)
               

               
               cje (0.826173)
               

               
               cmu (0.745573)
               

               
               cki (0.660939)
               

               
               csp (0.644745)
               

               
               mga (0.480615)
               

               
               che (0.408942)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               nlu (0.383362)
               

               
               ese (0.379507)
               

               
               bla (0.373042)
               

               
               cly (0.361925)
               

               
               sto (0.359648)
               

               
               clu (0.358938)
               

               
               ton (0.351)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               cty (0.20816)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	192-511, gnl\|bosTau2\|chr16 (38705556-38705862)
	192-511, gnl\|Hg17\|chr1 (15501145-15501449)
	192-511, gnl\|Mm7\|chr4 (141237706-141237399)

	667-1224, gnl\|bosTau2\|chr16 (38706084-38706623)
	667-1224, gnl\|Hg17\|chr1 (15501594-15502133)
	667-1224, gnl\|Mm7\|chr4 (141237360-141236781)

	cut (1.35939)
	cst (1.26033)
	cje (0.826173)
	cmu (0.745573)
	cki (0.660939)
	csp (0.644745)
	mga (0.480615)
	che (0.408942)
	pla (0.401016)
	ute (0.398353)
	nlu (0.383362)
	ese (0.379507)
	bla (0.373042)
	cly (0.361925)
	sto (0.359648)
	clu (0.358938)
	ton (0.351)
	cag (0.302389)
	ski (0.29347)
	cte (0.29274)
	kid (0.259471)
	ova (0.258264)
	sug (0.254582)
	eru (0.240096)
	cbe (0.239234)
	cty (0.20816)
	nbm (0.198649)
	eje (0.197668)
	aor (0.195274)
	sin (0.174948)
	duo (0.172801)
	fat (0.147427)
	spl (0.143184)
	csk (0.140746)
	hlv (0.139256)
	nmm (0.132802)
	med (0.116252)
	spc (0.113366)
	jej (0.0989218)