Non-Coding RNA Search

Ss1.1-rnbm24b_j1.5

Sequence:


               
               GCGCTTCCGCCATCTTTCTAGCCCTCAGTCAGACGGGCGCGGAGACGCTTCTGGAAGTAA
CATCACGATGGCTGCCCAAGGAGAGCCCCAAGTTCAGTTCAAACTTGTATTGGTTGGTGA
TGGTGGTACTGGGAAAACTACATTCGTGAAACGTCATCTGACTGGTGAATTTGAGAAGAA
GTATGTAGCTACCTTGGGTGTTGAGGTCCATCCCCTTGTGTTCCATACCAACAGAGGACC
TATTAAGTTCAATGTATGGGATACGGCTGGTCAGGAGAAATTTGGTGGACTGAGAGATGG
CTATTATATCCAAGCTCAGTGTGCCATTATAATGTTTGATGTAACATCGAGAGTTACTTA
CAAGAACGTACCTAACTGGCATAGAGATCTGGTACGAGTGTGTGAAAACATCCCCATTGT
GTTGTGTGGCAACAAAGTGGATATTAAGGACAGAAAGGTTAAGGCAAAATCGATTGTCTT
CCACCGAAAGAAGAACCTTCAGTACTACGACATTTCTGCAAAAAGTAACTACAACTTTGA
AAAGCCCTTCCTCTGGCTTGCTAGGAAACTGATCGGAGACCCTAACTTGGAGTTTGTCGC
CATGCCTGCTCTTGCCCCGCCAGAGGTGGTCATGGACCCAGCCTTGGCAGCACAGTATGA
GCATGATCTAGAGGTTGCTCAGACAACTGCTCTCCCGGATGAAGATGATGACCTGTGAGA
AAACAAAGCTGGAGCCCAGCGTCAGAAGTCTAGTTTTATAGGCAACTGTCCTGTGATGTC
AGTGGTGCAGCGTGTTTGCCACTTTATTATATAGCTAAGCAGAATATGTGCTTAATCTTT
GGGGTGCTGAAGGAGATGAATGGGCTTCGGAGTGAATGTGGCAGTTAAAAAAATATACCT
TCATTTTTTGGACCTGCATATTTAGCTGTTTTGGAACACAGTTGTTTCCTTCTTGAGTTT
CAAATATAAGACTGCTACAGTCGCATCACAATATTCCGTGGTGAAATCTTGTTTGTTACT
GTCATTCCCATTCCTTTTCGTTTAGAATCAGAATAAAGTTGTATTTCAAATATCTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAGCATTTTAAAACCACTAAATTGTGCCATGTTACT
ATTTTGGATTGCCTTTGCTATTACCATTTAATTTGAAGTTTATTAGGTTAAGTACTTCTA
ATTTCCTGTACATCTGAATCATTTCACACAAGATGACAGGTCAGCAGTATTGTATTCGAT
AAGAGTTGTAAATATTGTCAATGCAGTTAGGCTAAAAAAATACCTACTCCACCTGCTTTT
TGGCCTATAGTGTTAGCTAGGGAAGAGCTTGTTTGGGATTTATGTGACCTGTGAAAATAA
AAGTGGTACATGTTTTAGACATTTCAAATAGATACCTTAAGAATTATATAGTTGCTTTTA
TGGCGGAAGTAACAATGTTCTAATGTAGAGCTTTTCAAAGTCCGCTGAAACCATACAAAT
GGTTTCAGAAACTGGAGGGATGTCTCACCTGTTTAAAATGAATATGAGTTGTGCATTTAC
TTGCCTTTGTTTTAATGTTACGTGTTTAATGTAAAGTTGGTATTCTAGGATATTCCTGTT
TACCTGCTGCTTTCAAGTACTCCCAAGCTTTAATGATGTCAAAGATTAAGGATTTAATTG
AACAAACCACAGCTTTGATGGGTTTTTTTTTTTTTCCCTCAGAATTTTTGTGGGCAGTAC
AAGGACACAGCAGGCTACTGCTACAGAAAAATAGAGCTTAGGATGGCTTTTCTAATGTGA
AGCAGACTGCAAAACTTCTGTTCAGATTCAATGTTTATCTTTGTATGGTTTCCACATGTA
AAACATGAATTGGGTCTGTCTTGCTTGAGTTTGATCACATCGACCCCATGCTGTAGCAAT
TAGAAATCTTAAAAATAAGAGCTGTTTTGCTCAAGTAAGTACTACTGTACTATAGTTCAA
TTTACCAAAGTTTTAGATGTCCACTTAAATGATTGCTTTCCTACCTAAAAAGGATGTAGG
GAAGGCTCTCTATAAGTATATGGAAAAATGAAACAAAGGGTGAAATATTGAATGAATATA
TCCATAGATTCACTTACAGATTGAATTGCTGTATATGCTATGCTATATTCAGTTCAGAAC
CAGATCTTAACAGATGTGAAAGTTTCTTCCTATGATGGGGATGAAACCCTTTCATTCACA
TAGTTAACATGAGAAGTGTGTGCTGCTTGTAACCTTATGTAGAATGCAAAGTGTGACAAA
TATTCTGAATCTTAAATGTAACAGTTAAATCTTGGAAGCTACTTCACTTGCTGAATGGGA
AGGAGGTGGGAGAGAATTTACAAGTCGTATATTGGAAGAAAAAAATTGCTGCAAAATACA
TTGCTTTTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTTCCGCCATCTTTCTAGCCCTCAGTCAGACGGGCGCGGAGACGCTTCTGGAAGTAA
CATCACGATGGCTGCCCAAGGAGAGCCCCAAGTTCAGTTCAAACTTGTATTGGTTGGTGA
TGGTGGTACTGGGAAAACTACATTCGTGAAACGTCATCTGACTGGTGAATTTGAGAAGAA
GTATGTAGCTACCTTGGGTGTTGAGGTCCATCCCCTTGTGTTCCATACCAACAGAGGACC
TATTAAGTTCAATGTATGGGATACGGCTGGTCAGGAGAAATTTGGTGGACTGAGAGATGG
CTATTATATCCAAGCTCAGTGTGCCATTATAATGTTTGATGTAACATCGAGAGTTACTTA
CAAGAACGTACCTAACTGGCATAGAGATCTGGTACGAGTGTGTGAAAACATCCCCATTGT
GTTGTGTGGCAACAAAGTGGATATTAAGGACAGAAAGGTTAAGGCAAAATCGATTGTCTT
CCACCGAAAGAAGAACCTTCAGTACTACGACATTTCTGCAAAAAGTAACTACAACTTTGA
AAAGCCCTTCCTCTGGCTTGCTAGGAAACTGATCGGAGACCCTAACTTGGAGTTTGTCGC
CATGCCTGCTCTTGCCCCGCCAGAGGTGGTCATGGACCCAGCCTTGGCAGCACAGTATGA
GCATGATCTAGAGGTTGCTCAGACAACTGCTCTCCCGGATGAAGATGATGACCTGTGAGA
AAACAAAGCTGGAGCCCAGCGTCAGAAGTCTAGTTTTATAGGCAACTGTCCTGTGATGTC
AGTGGTGCAGCGTGTTTGCCACTTTATTATATAGCTAAGCAGAATATGTGCTTAATCTTT
GGGGTGCTGAAGGAGATGAATGGGCTTCGGAGTGAATGTGGCAGTTAAAAAAATATACCT
TCATTTTTTGGACCTGCATATTTAGCTGTTTTGGAACACAGTTGTTTCCTTCTTGAGTTT
CAAATATAAGACTGCTACAGTCGCATCACAATATTCCGTGGTGAAATCTTGTTTGTTACT
GTCATTCCCATTCCTTTTCGTTTAGAATCAGAATAAAGTTGTATTTCAAATATCTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAGCATTTTAAAACCACTAAATTGTGCCATGTTACT
ATTTTGGATTGCCTTTGCTATTACCATTTAATTTGAAGTTTATTAGGTTAAGTACTTCTA
ATTTCCTGTACATCTGAATCATTTCACACAAGATGACAGGTCAGCAGTATTGTATTCGAT
AAGAGTTGTAAATATTGTCAATGCAGTTAGGCTAAAAAAATACCTACTCCACCTGCTTTT
TGGCCTATAGTGTTAGCTAGGGAAGAGCTTGTTTGGGATTTATGTGACCTGTGAAAATAA
AAGTGGTACATGTTTTAGACATTTCAAATAGATACCTTAAGAATTATATAGTTGCTTTTA
TGGCGGAAGTAACAATGTTCTAATGTAGAGCTTTTCAAAGTCCGCTGAAACCATACAAAT
GGTTTCAGAAACTGGAGGGATGTCTCACCTGTTTAAAATGAATATGAGTTGTGCATTTAC
TTGCCTTTGTTTTAATGTTACGTGTTTAATGTAAAGTTGGTATTCTAGGATATTCCTGTT
TACCTGCTGCTTTCAAGTACTCCCAAGCTTTAATGATGTCAAAGATTAAGGATTTAATTG
AACAAACCACAGCTTTGATGGGTTTTTTTTTTTTTCCCTCAGAATTTTTGTGGGCAGTAC
AAGGACACAGCAGGCTACTGCTACAGAAAAATAGAGCTTAGGATGGCTTTTCTAATGTGA
AGCAGACTGCAAAACTTCTGTTCAGATTCAATGTTTATCTTTGTATGGTTTCCACATGTA
AAACATGAATTGGGTCTGTCTTGCTTGAGTTTGATCACATCGACCCCATGCTGTAGCAAT
TAGAAATCTTAAAAATAAGAGCTGTTTTGCTCAAGTAAGTACTACTGTACTATAGTTCAA
TTTACCAAAGTTTTAGATGTCCACTTAAATGATTGCTTTCCTACCTAAAAAGGATGTAGG
GAAGGCTCTCTATAAGTATATGGAAAAATGAAACAAAGGGTGAAATATTGAATGAATATA
TCCATAGATTCACTTACAGATTGAATTGCTGTATATGCTATGCTATATTCAGTTCAGAAC
CAGATCTTAACAGATGTGAAAGTTTCTTCCTATGATGGGGATGAAACCCTTTCATTCACA
TAGTTAACATGAGAAGTGTGTGCTGCTTGTAACCTTATGTAGAATGCAAAGTGTGACAAA
TATTCTGAATCTTAAATGTAACAGTTAAATCTTGGAAGCTACTTCACTTGCTGAATGGGA
AGGAGGTGGGAGAGAATTTACAAGTCGTATATTGGAAGAAAAAAATTGCTGCAAAATACA
TTGCTTTTACTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|32425497|gb|AAH04272.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32425497|gb|AAH04272.2|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               364-470, - strand, RNAz p=0.55098
               

               
               477-750, + strand, RNAz p=0.869024

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               364-470, - strand, RNAz p=0.55098
               

               
               477-750, + strand, RNAz p=0.869024

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               3-1094, gnl|bosTau2|chr4 (39736133-39735040)
               

               
               3-1094, gnl|Hg17|chr6 (30561641-30562708)
               

               
               3-1094, gnl|Mm7|chr2 (41996182-41994434)
               


               
               24-1088, gnl|bosTau2|chr10 (48943103-48944184)
               

               
               24-1088, gnl|Hg17|chr6 (30561652-30562710)
               

               
               24-1088, gnl|Mm7|chr2 (41996178-41994434)
               


               
               2083-2324, gnl|bosTau2|chr17 (24041101-24040875)
               

               
               2083-2324, gnl|Hg17|chr12 (129886769-129887018)
               

               
               2083-2324, gnl|Mm7|chr2 (41993563-41993362)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1094, gnl|bosTau2|chr4 (39736133-39735040)
               

               
               3-1094, gnl|Hg17|chr6 (30561641-30562708)
               

               
               3-1094, gnl|Mm7|chr2 (41996182-41994434)
               


               
               24-1088, gnl|bosTau2|chr10 (48943103-48944184)
               

               
               24-1088, gnl|Hg17|chr6 (30561652-30562710)
               

               
               24-1088, gnl|Mm7|chr2 (41996178-41994434)
               


               
               2083-2324, gnl|bosTau2|chr17 (24041101-24040875)
               

               
               2083-2324, gnl|Hg17|chr12 (129886769-129887018)
               

               
               2083-2324, gnl|Mm7|chr2 (41993563-41993362)

Expressed library(ies): 87 entry(ies)

More info

Expressed library(ies): 87 entry(ies)

Help | Less info


               
               cte (7.90398)
               

               
               cki (2.80899)
               

               
               sto (2.51753)
               

               
               lin (2.32964)
               

               
               spl (2.00458)
               

               
               csk (1.97044)
               

               
               cbe (1.91388)
               

               
               thg (1.77507)
               

               
               ret (1.67353)
               

               
               sug (1.65479)
               

               
               liv (1.60913)
               

               
               tbr (1.3876)
               

               
               mgp (1.38408)
               

               
               mgm (1.2624)
               

               
               cst (1.26033)
               

               
               tes (1.24688)
               

               
               sin (1.22463)
               

               
               ski (1.17388)
               

               
               aor (1.17165)
               

               
               spc (1.13366)
               

               
               tra (1.10783)
               

               
               nep (1.10355)
               

               
               gul (1.06553)
               

               
               kid (1.03788)
               

               
               eye (1.02302)
               

               
               vin (0.997672)
               

               
               cmu (0.931966)
               

               
               sme (0.91631)
               

               
               eli (0.910885)
               

               
               rec (0.865351)
               

               
               lnt (0.853849)
               

               
               mcp (0.853242)
               

               
               cut (0.849618)
               

               
               fli (0.811524)
               

               
               fcc (0.791139)
               

               
               ova (0.774793)
               

               
               elu (0.770713)
               

               
               lun (0.752445)
               

               
               bfe (0.749288)
               

               
               sag (0.730861)
               

               
               eje (0.691836)
               

               
               ldo (0.679018)
               

               
               lyg (0.665513)
               

               
               nmm (0.664011)
               

               
               cje (0.660939)
               

               
               mga (0.64082)
               

               
               ese (0.632511)
               

               
               bla (0.621736)
               

               
               isp (0.601504)
               

               
               pgl (0.592417)
               

               
               med (0.58126)
               

               
               ecc (0.575175)
               

               
               nlu (0.575043)
               

               
               che (0.545256)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               nbm (0.496623)
               

               
               pan (0.471921)
               

               
               fco (0.471624)
               

               
               cag (0.453583)
               

               
               fat (0.442282)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               cty (0.41632)
               

               
               nca (0.410621)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               col (0.390016)
               

               
               eru (0.360144)
               

               
               clu (0.358938)
               

               
               duo (0.345602)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 87 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (7.90398)
               

               
               cki (2.80899)
               

               
               sto (2.51753)
               

               
               lin (2.32964)
               

               
               spl (2.00458)
               

               
               csk (1.97044)
               

               
               cbe (1.91388)
               

               
               thg (1.77507)
               

               
               ret (1.67353)
               

               
               sug (1.65479)
               

               
               liv (1.60913)
               

               
               tbr (1.3876)
               

               
               mgp (1.38408)
               

               
               mgm (1.2624)
               

               
               cst (1.26033)
               

               
               tes (1.24688)
               

               
               sin (1.22463)
               

               
               ski (1.17388)
               

               
               aor (1.17165)
               

               
               spc (1.13366)
               

               
               tra (1.10783)
               

               
               nep (1.10355)
               

               
               gul (1.06553)
               

               
               kid (1.03788)
               

               
               eye (1.02302)
               

               
               vin (0.997672)
               

               
               cmu (0.931966)
               

               
               sme (0.91631)
               

               
               eli (0.910885)
               

               
               rec (0.865351)
               

               
               lnt (0.853849)
               

               
               mcp (0.853242)
               

               
               cut (0.849618)
               

               
               fli (0.811524)
               

               
               fcc (0.791139)
               

               
               ova (0.774793)
               

               
               elu (0.770713)
               

               
               lun (0.752445)
               

               
               bfe (0.749288)
               

               
               sag (0.730861)
               

               
               eje (0.691836)
               

               
               ldo (0.679018)
               

               
               lyg (0.665513)
               

               
               nmm (0.664011)
               

               
               cje (0.660939)
               

               
               mga (0.64082)
               

               
               ese (0.632511)
               

               
               bla (0.621736)
               

               
               isp (0.601504)
               

               
               pgl (0.592417)
               

               
               med (0.58126)
               

               
               ecc (0.575175)
               

               
               nlu (0.575043)
               

               
               che (0.545256)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               nbm (0.496623)
               

               
               pan (0.471921)
               

               
               fco (0.471624)
               

               
               cag (0.453583)
               

               
               fat (0.442282)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               cty (0.41632)
               

               
               nca (0.410621)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               col (0.390016)
               

               
               eru (0.360144)
               

               
               clu (0.358938)
               

               
               duo (0.345602)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	364-470, - strand, RNAz p=0.55098
	477-750, + strand, RNAz p=0.869024

	3-1094, gnl\|bosTau2\|chr4 (39736133-39735040)
	3-1094, gnl\|Hg17\|chr6 (30561641-30562708)
	3-1094, gnl\|Mm7\|chr2 (41996182-41994434)

	24-1088, gnl\|bosTau2\|chr10 (48943103-48944184)
	24-1088, gnl\|Hg17\|chr6 (30561652-30562710)
	24-1088, gnl\|Mm7\|chr2 (41996178-41994434)

	2083-2324, gnl\|bosTau2\|chr17 (24041101-24040875)
	2083-2324, gnl\|Hg17\|chr12 (129886769-129887018)
	2083-2324, gnl\|Mm7\|chr2 (41993563-41993362)

	cte (7.90398)
	cki (2.80899)
	sto (2.51753)
	lin (2.32964)
	spl (2.00458)
	csk (1.97044)
	cbe (1.91388)
	thg (1.77507)
	ret (1.67353)
	sug (1.65479)
	liv (1.60913)
	tbr (1.3876)
	mgp (1.38408)
	mgm (1.2624)
	cst (1.26033)
	tes (1.24688)
	sin (1.22463)
	ski (1.17388)
	aor (1.17165)
	spc (1.13366)
	tra (1.10783)
	nep (1.10355)
	gul (1.06553)
	kid (1.03788)
	eye (1.02302)
	vin (0.997672)
	cmu (0.931966)
	sme (0.91631)
	eli (0.910885)
	rec (0.865351)
	lnt (0.853849)
	mcp (0.853242)
	cut (0.849618)
	fli (0.811524)
	fcc (0.791139)
	ova (0.774793)
	elu (0.770713)
	lun (0.752445)
	bfe (0.749288)
	sag (0.730861)
	eje (0.691836)
	ldo (0.679018)
	lyg (0.665513)
	nmm (0.664011)
	cje (0.660939)
	mga (0.64082)
	ese (0.632511)
	bla (0.621736)
	isp (0.601504)
	pgl (0.592417)
	med (0.58126)
	ecc (0.575175)
	nlu (0.575043)
	che (0.545256)
	fty (0.527519)
	ill (0.526778)
	pro (0.512033)
	fhi (0.508733)
	nbm (0.496623)
	pan (0.471921)
	fco (0.471624)
	cag (0.453583)
	fat (0.442282)
	pty (0.428143)
	nms (0.427716)
	cty (0.41632)
	nca (0.410621)
	hea (0.408998)
	ste (0.405625)
	col (0.390016)
	eru (0.360144)
	clu (0.358938)
	duo (0.345602)
	nje (0.33184)
	nco (0.323468)
	csp (0.322373)
	hyp (0.285673)
	hlv (0.278513)
	eep (0.245128)
	ece (0.229305)
	jca (0.22792)
	ton (0.1755)
	fbs (0.175346)
	pla (0.133672)
	ebs (0.118301)
	cbl (0.114797)
	jej (0.0989218)