Non-Coding RNA Search

Ss1.1-rnbm24b_j23.5

Sequence:


               
               ACTAAAACAAGGCTATAAGACTGTAGTAATGAAGATAGGAAAGGGCAGATTTGAGAGACA
CTCAGGAGATAGAATTAATAGGACACAGTGGATAATGGAATGGGAAGAGGAGTAGAGGCT
GACGCTCACTCTGCTTGAGCAGGTGAGTATATTGGGACATTACTCTAGCCAAGATTGGGG
GTAAAGGGGAGATGATAGAAGGAAGGTGGTGAATTTTGTCGAAAGACATTTAGCCTTGTA
TAGACTGAGTTTTGAGGTTCCCATGGGATAACAAGGTTAAGATTTCCAGTAAACATTTGT
GTTTTGGTGCTCAGGGAAAACTACAAAACTGCAGTTATAGATATGGGATTTGTACTCATA
TAGATGGTAGTTAAAACCATATGAGTGAATAAGATGGTTTAGAAAAAGAGTAGAGCAAGG
GAAACCTAGTGTACCAATCTAGGAAGTGCAAGTTATAAGATGGGGGGAAAGAAGCCGAAC
CTAAAATGACTATCAGATCGCTAGTAGATATCTTGTATGTTTCTGATTGATTTAATGAGG
TGGGAGAATAGTCAAGAGAATGGAATAGAATTAAAGAAAGATGTGATTAACAGCATAAAA
AGTGCTGCAGTGAGGAGGGGTATTTTTTTCTACTTAGTTTACCATCCTCCAACCCATCTT
CTCTGGGATCTTATATAGTCATTCTCCGGTATTTCTTGAAAATGAGCATTGAAAAAAGCT
AACTTAAGGCTAAGACTGGGACTTCCAAGTTGCTCACCACAACTACCACCACCACCTCCA
CCTCCAGCTTCCTCCTATCCTCAGGAGATAACTTGTAAAAGAATGAAATAAACAAACCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAAAACAAGGCTATAAGACTGTAGTAATGAAGATAGGAAAGGGCAGATTTGAGAGACA
CTCAGGAGATAGAATTAATAGGACACAGTGGATAATGGAATGGGAAGAGGAGTAGAGGCT
GACGCTCACTCTGCTTGAGCAGGTGAGTATATTGGGACATTACTCTAGCCAAGATTGGGG
GTAAAGGGGAGATGATAGAAGGAAGGTGGTGAATTTTGTCGAAAGACATTTAGCCTTGTA
TAGACTGAGTTTTGAGGTTCCCATGGGATAACAAGGTTAAGATTTCCAGTAAACATTTGT
GTTTTGGTGCTCAGGGAAAACTACAAAACTGCAGTTATAGATATGGGATTTGTACTCATA
TAGATGGTAGTTAAAACCATATGAGTGAATAAGATGGTTTAGAAAAAGAGTAGAGCAAGG
GAAACCTAGTGTACCAATCTAGGAAGTGCAAGTTATAAGATGGGGGGAAAGAAGCCGAAC
CTAAAATGACTATCAGATCGCTAGTAGATATCTTGTATGTTTCTGATTGATTTAATGAGG
TGGGAGAATAGTCAAGAGAATGGAATAGAATTAAAGAAAGATGTGATTAACAGCATAAAA
AGTGCTGCAGTGAGGAGGGGTATTTTTTTCTACTTAGTTTACCATCCTCCAACCCATCTT
CTCTGGGATCTTATATAGTCATTCTCCGGTATTTCTTGAAAATGAGCATTGAAAAAAGCT
AACTTAAGGCTAAGACTGGGACTTCCAAGTTGCTCACCACAACTACCACCACCACCTCCA
CCTCCAGCTTCCTCCTATCCTCAGGAGATAACTTGTAAAAGAATGAAATAAACAAACCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               725-840, - strand, RNAz p=0.589337

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               725-840, - strand, RNAz p=0.589337

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               353-840, gnl|bosTau2|chr3 (76953995-76953515)
               

               
               353-840, gnl|Hg17|chr1 (36059623-36060091)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               353-840, gnl|bosTau2|chr3 (76953995-76953515)
               

               
               353-840, gnl|Hg17|chr1 (36059623-36060091)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               fbs (0.175346)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               fbs (0.175346)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	353-840, gnl\|bosTau2\|chr3 (76953995-76953515)
	353-840, gnl\|Hg17\|chr1 (36059623-36060091)

	mgp (0.230681)
	fli (0.202881)
	fbs (0.175346)
	pgl (0.118483)
	nbm (0.0993246)