Non-Coding RNA Search

Ss1.1-rnbm28b_b19.5

Sequence:


               
               AGCACTGTCATTTAGACCTACTGAAAAATCCTAAGAATGAAACCATGGTAAGCAGGTCAA
TGTTTGTGCCTACTATACTTTCCTTTGAACCAAGAGCCCAGTAAACTTTCTAATGGCTTT
AAATGAATAAGAATAAAAGGCCAGTTTCACTTCCTCAATTTTTATTGATGTGCCTCACTT
ATTTTAATGGCTTGCATGTATTTTTTAGTGCTGTGTTAGTAATGATTTAATGTAAATTCA
TACCAATAGGAAAAATCTCACTGTGTTAAAATTAGTTTTGGGGTCCCTTCTGTTGTATAC
AATTGTTGTTTAATATTAAAACCATAGCAATATACATCCAGCACTATCAAATTTTCTTCT
TTACTGCAAGTTGTGGAACAAACTTTATTCTCTATATGTCATTTTTATTTCCCTTTCAAC
ATAATTTCTTTATTGTAAGAAAAGCCACCAATATTCATTTTTAAGGAATACTGCAATCCT
ATATTATTCTCTCGTTCGTTATTTTGTAAAATCCGTAAAAATCCTCTCCGTATCTCCACA
CCAATAACTGAGGGACTGTCTATTATTCGATCTTTTAAAAAATTGGATTATATCATGCTT
TTGTTTAAAATACTTTTCAGTTTTTATTTAAAGTTGAAGTGGCTTGTTCTTAAACGTTGT
TTTATTGCCCTGCATGTATTTTTTAATAAAGAAATATTGGTTTCACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACTGTCATTTAGACCTACTGAAAAATCCTAAGAATGAAACCATGGTAAGCAGGTCAA
TGTTTGTGCCTACTATACTTTCCTTTGAACCAAGAGCCCAGTAAACTTTCTAATGGCTTT
AAATGAATAAGAATAAAAGGCCAGTTTCACTTCCTCAATTTTTATTGATGTGCCTCACTT
ATTTTAATGGCTTGCATGTATTTTTTAGTGCTGTGTTAGTAATGATTTAATGTAAATTCA
TACCAATAGGAAAAATCTCACTGTGTTAAAATTAGTTTTGGGGTCCCTTCTGTTGTATAC
AATTGTTGTTTAATATTAAAACCATAGCAATATACATCCAGCACTATCAAATTTTCTTCT
TTACTGCAAGTTGTGGAACAAACTTTATTCTCTATATGTCATTTTTATTTCCCTTTCAAC
ATAATTTCTTTATTGTAAGAAAAGCCACCAATATTCATTTTTAAGGAATACTGCAATCCT
ATATTATTCTCTCGTTCGTTATTTTGTAAAATCCGTAAAAATCCTCTCCGTATCTCCACA
CCAATAACTGAGGGACTGTCTATTATTCGATCTTTTAAAAAATTGGATTATATCATGCTT
TTGTTTAAAATACTTTTCAGTTTTTATTTAAAGTTGAAGTGGCTTGTTCTTAAACGTTGT
TTTATTGCCCTGCATGTATTTTTTAATAAAGAAATATTGGTTTCACTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               79-547, gnl|bosTau2|chr8 (26025167-26024720)
               

               
               79-547, gnl|Hg17|chr9 (74998694-74999154)
               


               
               548-708, gnl|bosTau2|chr8 (26024486-26024328)
               

               
               548-708, gnl|hg17|chr9 (74999364-74999510)
               

               
               548-708, gnl|Hg17|chr9 (74999364-74999566)
               

               
               548-708, gnl|panTro1|chr11 (58878287-58878433)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-547, gnl|bosTau2|chr8 (26025167-26024720)
               

               
               79-547, gnl|Hg17|chr9 (74998694-74999154)
               


               
               548-708, gnl|bosTau2|chr8 (26024486-26024328)
               

               
               548-708, gnl|hg17|chr9 (74999364-74999510)
               

               
               548-708, gnl|Hg17|chr9 (74999364-74999566)
               

               
               548-708, gnl|panTro1|chr11 (58878287-58878433)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fat (0.147427)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               nbm (0.0993246)

	79-547, gnl\|bosTau2\|chr8 (26025167-26024720)
	79-547, gnl\|Hg17\|chr9 (74998694-74999154)

	548-708, gnl\|bosTau2\|chr8 (26024486-26024328)
	548-708, gnl\|hg17\|chr9 (74999364-74999510)
	548-708, gnl\|Hg17\|chr9 (74999364-74999566)
	548-708, gnl\|panTro1\|chr11 (58878287-58878433)