Non-Coding RNA Search

Ss1.1-rnbm28b_n18.5

Sequence:


               
               CCACGCGTCCGCTTATCTATTTATTGCCCTTGAAAAATATGTGTAGAGGTTATTTTTCTG
TTAGTTGTTACTGCTTTCTTAATTTGTTCCAAAGATAACACTGCCATTCTGCATTCCCAT
TAGAAGAGACAAAACTCAAAACCAGCAATGCTACTATCAGATAAGTAGATATCAATGTAT
ACTTATAAGAAATAACTAAGAAATGTAATGTGTTTGTTAATTCAGCCTTTTTCTATGTAA
TATTTCCAAGTCAGACTTTCTTACATTCCTAGAATTCAGTTTGATATACCAAGCGTAATA
ATGATAAAATGTTTGCTTTGAATACTGTGGGGGAAAAATTAAATGTGCAATTCTATTTTT
TAAAAAATCTCAGAGATACTGGTTTCCCATCCTTGAAGGTTATAAAGAATTTAGAGCTAT
TATGTCTTTATTTTCTTATATTTGTTCAAGGCAACAAATTACATATTCAGATATTTCTTT
GTTGGTTTGAGTACATTGAAATTTGATAGTGGTATATTAAAGCCTTTCCTTCCCAGTATT
TTTTAATGCTTGAAAATTATTAAATGTACACTGCTAGCAGAAATTAGTTCTTAAACCATT
TTTTAAGATTTATAGGCTAGATTAGGGGCACATTTACATCAACCAGTCACTATTAGAGCT
AGCAAAAGAGGCAGATGAATGAATGGATATGGTCATTGCACCTTCTTGTACTTTCAAAGC
CTATTCCTTAAAGTTAGTAACCAGTCTGCTGATTACTATAATATGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGCTTATCTATTTATTGCCCTTGAAAAATATGTGTAGAGGTTATTTTTCTG
TTAGTTGTTACTGCTTTCTTAATTTGTTCCAAAGATAACACTGCCATTCTGCATTCCCAT
TAGAAGAGACAAAACTCAAAACCAGCAATGCTACTATCAGATAAGTAGATATCAATGTAT
ACTTATAAGAAATAACTAAGAAATGTAATGTGTTTGTTAATTCAGCCTTTTTCTATGTAA
TATTTCCAAGTCAGACTTTCTTACATTCCTAGAATTCAGTTTGATATACCAAGCGTAATA
ATGATAAAATGTTTGCTTTGAATACTGTGGGGGAAAAATTAAATGTGCAATTCTATTTTT
TAAAAAATCTCAGAGATACTGGTTTCCCATCCTTGAAGGTTATAAAGAATTTAGAGCTAT
TATGTCTTTATTTTCTTATATTTGTTCAAGGCAACAAATTACATATTCAGATATTTCTTT
GTTGGTTTGAGTACATTGAAATTTGATAGTGGTATATTAAAGCCTTTCCTTCCCAGTATT
TTTTAATGCTTGAAAATTATTAAATGTACACTGCTAGCAGAAATTAGTTCTTAAACCATT
TTTTAAGATTTATAGGCTAGATTAGGGGCACATTTACATCAACCAGTCACTATTAGAGCT
AGCAAAAGAGGCAGATGAATGAATGGATATGGTCATTGCACCTTCTTGTACTTTCAAAGC
CTATTCCTTAAAGTTAGTAACCAGTCTGCTGATTACTATAATATGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               90-204, - strand, RNAz p=0.722048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-204, - strand, RNAz p=0.722048

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               12-747, gnl|bosTau2|chr10 (36453908-36453182)
               

               
               12-747, gnl|Mm7|chr9 (70635283-70634615)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-747, gnl|bosTau2|chr10 (36453908-36453182)
               

               
               12-747, gnl|Mm7|chr9 (70635283-70634615)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	12-747, gnl\|bosTau2\|chr10 (36453908-36453182)
	12-747, gnl\|Mm7\|chr9 (70635283-70634615)