Non-Coding RNA Search

Ss1.1-rnbm29b_h1.5

Sequence:


               
               ATCACCCTTTTACCAGCTGATGTGCCAGTTACTAATCACCCATTTCAGTTATATTAATCT
ACCCTCCATGAGGATATTTATGAGGCCACGCCTTTTTTTAGATGCCTTCCGTTTACTCTT
TATCCCTGACATATGTATCTGTGTATTTCATGGAGAATTTAAGTGTTTTTTCTTTTAAAT
TTATGAACAATTTGCAGCTAATCAACCTGACCTTGTCCCTAATGAATTTTTAATTGATGA
GGTTTTATTGTAGCTTATTTTTCTCTCAGTGCATCTTGCTGCGTCAGTTAGCTTGTTTCC
ATTTTGGTTTTCTAATAGTTTTTTTCATTCACAGTCTCTTAAAGCCAGTGAGCCCCATTC
TGTTTTGCGAAGGTCCAAAGAATCCTAGAAAACCTTTGATATTAAACCATTTCATAAAAC
CAAATTTGACCAAATACTTTAAAGTTTGTCTTATCTTAGAAAAACAGAACATTTTAAGTC
TCTGCCTGCATTTAAAACTGCCATACTACCTTATAGTAAGTTTCTATTTTATTACTTTGG
GGCTAAGGATTAAATAATTTCCCAGGAAAAATATTTTACGTTCTTGTTTTAGTATCTTAA
ACTACTATGCTGTAAACAATGTTAGTTTCACAGTCTTTTTGGTTTTTTATTACCTGCAGG
TTTATGTTCTTCATTGACTTTCATATTCGAGAGAGTGTTGTCTTGATTGAAACAGATTTG
CACAACCATCGCATTTCCATTCATCTGGTTGGAAATGACACTGGTTTGGGGATAGACCTT
TAAATGCCCTTGTGGCCCCCCTGGGGAGCGCTGTGCCTGGACCTCCTCCCTAAGACTGTG
CTGAGGGGGAGACGGAGCTCAGGCTTCCTCAGTGCATTAGGGAGCCCATCGGGGCCCTGT
CTCTTTGGGTGACCCTGTAGGGACGTCATTGTTTTTTTCTGACTCAAACAATAGGGAATC
CCTTCTGTTACGCCTCAAGGGATTGTTCTTTGCCTCACAACGTGGTCATTTTCTCCATGG
ATTAGTTTCCCTGTCTTGATTTCACTGGAATGTAAGCTCCAGATGCTCTGGAAGGGCAGG
GATTTTTGTCAGTTTTGTCTTCTACTGTATCACCAGCGCCTGGGTCAGAGTCTGCTGTAC
GTAGGTGCTCAATAAAAGTGTGTTCAATGAATTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCACCCTTTTACCAGCTGATGTGCCAGTTACTAATCACCCATTTCAGTTATATTAATCT
ACCCTCCATGAGGATATTTATGAGGCCACGCCTTTTTTTAGATGCCTTCCGTTTACTCTT
TATCCCTGACATATGTATCTGTGTATTTCATGGAGAATTTAAGTGTTTTTTCTTTTAAAT
TTATGAACAATTTGCAGCTAATCAACCTGACCTTGTCCCTAATGAATTTTTAATTGATGA
GGTTTTATTGTAGCTTATTTTTCTCTCAGTGCATCTTGCTGCGTCAGTTAGCTTGTTTCC
ATTTTGGTTTTCTAATAGTTTTTTTCATTCACAGTCTCTTAAAGCCAGTGAGCCCCATTC
TGTTTTGCGAAGGTCCAAAGAATCCTAGAAAACCTTTGATATTAAACCATTTCATAAAAC
CAAATTTGACCAAATACTTTAAAGTTTGTCTTATCTTAGAAAAACAGAACATTTTAAGTC
TCTGCCTGCATTTAAAACTGCCATACTACCTTATAGTAAGTTTCTATTTTATTACTTTGG
GGCTAAGGATTAAATAATTTCCCAGGAAAAATATTTTACGTTCTTGTTTTAGTATCTTAA
ACTACTATGCTGTAAACAATGTTAGTTTCACAGTCTTTTTGGTTTTTTATTACCTGCAGG
TTTATGTTCTTCATTGACTTTCATATTCGAGAGAGTGTTGTCTTGATTGAAACAGATTTG
CACAACCATCGCATTTCCATTCATCTGGTTGGAAATGACACTGGTTTGGGGATAGACCTT
TAAATGCCCTTGTGGCCCCCCTGGGGAGCGCTGTGCCTGGACCTCCTCCCTAAGACTGTG
CTGAGGGGGAGACGGAGCTCAGGCTTCCTCAGTGCATTAGGGAGCCCATCGGGGCCCTGT
CTCTTTGGGTGACCCTGTAGGGACGTCATTGTTTTTTTCTGACTCAAACAATAGGGAATC
CCTTCTGTTACGCCTCAAGGGATTGTTCTTTGCCTCACAACGTGGTCATTTTCTCCATGG
ATTAGTTTCCCTGTCTTGATTTCACTGGAATGTAAGCTCCAGATGCTCTGGAAGGGCAGG
GATTTTTGTCAGTTTTGTCTTCTACTGTATCACCAGCGCCTGGGTCAGAGTCTGCTGTAC
GTAGGTGCTCAATAAAAGTGTGTTCAATGAATTTCT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               1-393, gnl|bosTau2|chr20 (26521930-26521533)
               


               
               394-1176, gnl|bosTau2|chr20 (26522822-26523591)
               

               
               394-1176, gnl|Hg17|chr11 (111115951-111115100)
               

               
               394-1176, gnl|Mm7|chr9 (50859800-50860561)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-393, gnl|bosTau2|chr20 (26521930-26521533)
               


               
               394-1176, gnl|bosTau2|chr20 (26522822-26523591)
               

               
               394-1176, gnl|Hg17|chr11 (111115951-111115100)
               

               
               394-1176, gnl|Mm7|chr9 (50859800-50860561)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               jca (0.34188)
               

               
               ese (0.253004)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.34188)
               

               
               ese (0.253004)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	1-393, gnl\|bosTau2\|chr20 (26521930-26521533)

	394-1176, gnl\|bosTau2\|chr20 (26522822-26523591)
	394-1176, gnl\|Hg17\|chr11 (111115951-111115100)
	394-1176, gnl\|Mm7\|chr9 (50859800-50860561)

	jca (0.34188)
	ese (0.253004)
	nbm (0.198649)
	fcc (0.197785)
	nje (0.16592)
	hyp (0.142837)
	cst (0.140036)
	med (0.116252)
	cbl (0.114797)