Non-Coding RNA Search

Ss1.1-rnbm29b_o23.5

Sequence:


               
               CTTTCTTCTTTTAAGCCACTTTAAAAAATGTTATCTAACAGTTGCCCCTTATTCTTTCCT
TTTGAGGCAAGAAGGATAAAATGTTTATTGCTTCCTGGCATGGTTCTAAAGCATAAAAAG
GATAACATAAATTCAAGACTAAGGTAGAAAGAGAGAAACATTTCTAGCTGTCATTCAGGT
TGCCATGGGTGGATTCACATCAATAGTAACGTCTACACGGCAGCTCACTTTCTGTTTATC
TTCTAGGGGCTCAGCTTGGGATGAGACTGAAATACTCCTGGGTCTAAGCTGGTCCTCTAC
TAATCAGGCCCTTCCTTTTTATCTCTCTCCCACAGCTCCTGGGCAACGTGATAGTGGTTG
TTCTGGCTCGCCGCCTTGGCCATGACTTCAACCCGGATGTGCAGGCTGCTTTTCAGAAGG
TGGTGGCTGGTGTGGCCAATGCCCTGGCCCACAAGTACCACTAAGTTCCCCTTCCTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTTCTTTTAAGCCACTTTAAAAAATGTTATCTAACAGTTGCCCCTTATTCTTTCCT
TTTGAGGCAAGAAGGATAAAATGTTTATTGCTTCCTGGCATGGTTCTAAAGCATAAAAAG
GATAACATAAATTCAAGACTAAGGTAGAAAGAGAGAAACATTTCTAGCTGTCATTCAGGT
TGCCATGGGTGGATTCACATCAATAGTAACGTCTACACGGCAGCTCACTTTCTGTTTATC
TTCTAGGGGCTCAGCTTGGGATGAGACTGAAATACTCCTGGGTCTAAGCTGGTCCTCTAC
TAATCAGGCCCTTCCTTTTTATCTCTCTCCCACAGCTCCTGGGCAACGTGATAGTGGTTG
TTCTGGCTCGCCGCCTTGGCCATGACTTCAACCCGGATGTGCAGGCTGCTTTTCAGAAGG
TGGTGGCTGGTGTGGCCAATGCCCTGGCCCACAAGTACCACTAAGTTCCCCTTCCTGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-346, + strand, RNAz p=0.713162

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-346, + strand, RNAz p=0.713162

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-469, gnl|bosTau2|chr15 (31589122-31589590)
               

               
               1-469, gnl|Hg17|chr11 (5203871-5203400)
               


               
               18-290, gnl|bosTau2|chr15 (31548471-31548734)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-469, gnl|bosTau2|chr15 (31589122-31589590)
               

               
               1-469, gnl|Hg17|chr11 (5203871-5203400)
               


               
               18-290, gnl|bosTau2|chr15 (31548471-31548734)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nbm (0.297974)
               

               
               eli (0.151814)
               

               
               nca (0.136874)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.297974)
               

               
               eli (0.151814)
               

               
               nca (0.136874)

	1-469, gnl\|bosTau2\|chr15 (31589122-31589590)
	1-469, gnl\|Hg17\|chr11 (5203871-5203400)

	18-290, gnl\|bosTau2\|chr15 (31548471-31548734)