Non-Coding RNA Search

Ss1.1-rnbm30b_o2.5

Sequence:


               
               CCCCAGCCTACAGGGAGGGAGCACGAGGGCTCAGGGAAAGAACAGCACTGGGGTTTGTCT
CCCAACCAAAGGAACAGGATTAGAATCCAGACTGGTGTTCTCCAGCCTGTCTTCCATGCA
GGGGGCCCTTGGGATCTGGGGACCCCCTGGCCTGGCCAGAGCTGGTCCCCCACAGGGCTG
GAAGAGAGCCAGAGGCAGGCAGCCAATGGGAGTAGGGTGGGAACCAGGAGGACACTTGGA
ATGACGTGGGATGATTTCGGTTGTGACCCTGACCGAGAGGCTCAGGGAGGTGAATCGGAC
CCAGCAGGCAGGGACAAGACAACATGGCAACTGTGGGGGATCGGGGGACAGCGCCCCTGA
TGTGATTGTCCCTTTGGGCTGGTGTGGAGAGGGATGCTGCATTTCTCAGATGGGCAGTAA
TCAATTTAATGGTCCTTTAAAAATGTCTGTGTATTAAAAATTTAAGAATACCACACTTTA
ATATTAAATATTCATAAGGTCTAGTATCTTGATAATAATGTAGATGTTTTAATAACAATT
TTTGTCCTTCTTAAAATAAAACGTAAAGAAACTTGAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCAGCCTACAGGGAGGGAGCACGAGGGCTCAGGGAAAGAACAGCACTGGGGTTTGTCT
CCCAACCAAAGGAACAGGATTAGAATCCAGACTGGTGTTCTCCAGCCTGTCTTCCATGCA
GGGGGCCCTTGGGATCTGGGGACCCCCTGGCCTGGCCAGAGCTGGTCCCCCACAGGGCTG
GAAGAGAGCCAGAGGCAGGCAGCCAATGGGAGTAGGGTGGGAACCAGGAGGACACTTGGA
ATGACGTGGGATGATTTCGGTTGTGACCCTGACCGAGAGGCTCAGGGAGGTGAATCGGAC
CCAGCAGGCAGGGACAAGACAACATGGCAACTGTGGGGGATCGGGGGACAGCGCCCCTGA
TGTGATTGTCCCTTTGGGCTGGTGTGGAGAGGGATGCTGCATTTCTCAGATGGGCAGTAA
TCAATTTAATGGTCCTTTAAAAATGTCTGTGTATTAAAAATTTAAGAATACCACACTTTA
ATATTAAATATTCATAAGGTCTAGTATCTTGATAATAATGTAGATGTTTTAATAACAATT
TTTGTCCTTCTTAAAATAAAACGTAAAGAAACTTGAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               114-229, + strand, RNAz p=0.933079

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-229, + strand, RNAz p=0.933079

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017590, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017590, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-575, gnl|bosTau2|chr5 (71197939-71198537)
               

               
               1-575, gnl|Hg17|chr22 (40080046-40080607)
               

               
               1-575, gnl|Mm7|chr15 (81880128-81880655)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-575, gnl|bosTau2|chr5 (71197939-71198537)
               

               
               1-575, gnl|Hg17|chr22 (40080046-40080607)
               

               
               1-575, gnl|Mm7|chr15 (81880128-81880655)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cly (0.361925)
               

               
               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.361925)
               

               
               fty (0.351679)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	1-575, gnl\|bosTau2\|chr5 (71197939-71198537)
	1-575, gnl\|Hg17\|chr22 (40080046-40080607)
	1-575, gnl\|Mm7\|chr15 (81880128-81880655)

	cly (0.361925)
	fty (0.351679)
	nbm (0.198649)
	fcc (0.197785)
	cut (0.169924)
	nco (0.161734)
	cli (0.152812)
	eli (0.151814)
	che (0.136314)
	ese (0.126502)
	cty (0.10408)