Non-Coding RNA Search

Ss1.1-rnbm31b_k16.5

Sequence:


               
               TTTTTTTCATACTGTCATTTTTCTTATTTACAGAATCAATCAACACACATATGTTTCCAA
GAGGTGATGAGCCCTCAGCAACCCTCTCCCTAGTCCTGAGCTTGGACCTTAGTCCTGGAC
TAGAGCGTCCATGCAGCAGGAAAGGGATCTGGCAGAGACTTTCCCTGTCTTTGTAACTTA
CAGACAAGAGCGAACTGAGCAGGAAGTAAATTCCGGGGGCGTGGACCAGGGTGGGATGAC
AGGGTACCAAAGCAGGGACCAGAGATAAGGGAGAGAAAGGATACACAGTTTTATAAATAA
CTAGACAAGATCTCAGCATTTCTTTTGGGGGGTGGGGTGCAGGTAGGGAGGCTAGAGGCC
TACAGGGGCTTAAGTGGGAAAGGGAGAAATAGTGCTTGGGGCCAGAGTGGGTGAGGAATG
ATCTCTGAGCCTCGATTTGCCCCATCTTTCAAATGAATAGGTTGCCCTAGATGGTGCCAG
AGCAACTGGCTTGCTCAGACACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTCATACTGTCATTTTTCTTATTTACAGAATCAATCAACACACATATGTTTCCAA
GAGGTGATGAGCCCTCAGCAACCCTCTCCCTAGTCCTGAGCTTGGACCTTAGTCCTGGAC
TAGAGCGTCCATGCAGCAGGAAAGGGATCTGGCAGAGACTTTCCCTGTCTTTGTAACTTA
CAGACAAGAGCGAACTGAGCAGGAAGTAAATTCCGGGGGCGTGGACCAGGGTGGGATGAC
AGGGTACCAAAGCAGGGACCAGAGATAAGGGAGAGAAAGGATACACAGTTTTATAAATAA
CTAGACAAGATCTCAGCATTTCTTTTGGGGGGTGGGGTGCAGGTAGGGAGGCTAGAGGCC
TACAGGGGCTTAAGTGGGAAAGGGAGAAATAGTGCTTGGGGCCAGAGTGGGTGAGGAATG
ATCTCTGAGCCTCGATTTGCCCCATCTTTCAAATGAATAGGTTGCCCTAGATGGTGCCAG
AGCAACTGGCTTGCTCAGACACAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-197, - strand, RNAz p=0.870542
               

               
               350-501, - strand, RNAz p=0.998706

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.870542
               

               
               350-501, - strand, RNAz p=0.998706

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_005248, -
               

               
               5' of NM_005248, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005248, -
               

               
               5' of NM_005248, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-501, gnl|bosTau2|chr2 (78938876-78938382)
               

               
               6-501, gnl|Hg17|chr1 (27622958-27623457)
               

               
               6-501, gnl|Mm7|chr4 (132379429-132378886)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-501, gnl|bosTau2|chr2 (78938876-78938382)
               

               
               6-501, gnl|Hg17|chr1 (27622958-27623457)
               

               
               6-501, gnl|Mm7|chr4 (132379429-132378886)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)
               

               
               nbm (0.0993246)

	79-197, - strand, RNAz p=0.870542
	350-501, - strand, RNAz p=0.998706

	6-501, gnl\|bosTau2\|chr2 (78938876-78938382)
	6-501, gnl\|Hg17\|chr1 (27622958-27623457)
	6-501, gnl\|Mm7\|chr4 (132379429-132378886)