Non-Coding RNA Search

Ss1.1-rnbm33b_g21.5

Sequence:


               
               GCGGAGGGGCCTGCGCGGCTGCCCGGCCCGGCCGCGGATCAGGCTCCTGGGACCATGGGC
CTTGGGCCCTGAGGACGTGGGGCTCCCTGTGGCCATGACGACGGGTGACTGCTGTCACCT
CCCTGGCTCCCTGTGTGACTGCTCTGACAGCCCTGCCTTCTCCAAGGTTGTGGAGGCCAC
GGGCCTTGGGCCACCCCAGTATGTGGCCCAGGTGACTTCAAGGGACGGCCGGCTCCTCTC
CACTGTCATCCGGGCCTTGGACACGCCGAGTGATGGTCCCTTCTGCCGGATCTGCCATGA
GGGAGCGAATGGGGAGAGCTTGCTGTCTCCTTGTGGTTGCACTGGCACACTGGGCGCCGT
GCACAAGAGCTGTCTGGAGAGGTGGCTTTCCTCATCCAACACCAGCTACTGTGAGCTGTG
CCACACGGAGTTTGCAGTGGAGAAGCGGCCCCGGCCCCTCACAGAGTGGCTGAAGGACCC
AGGGCCTCGGACAGAGAAGCGGACGCTGTGCTGTGACATGGTTTGCTTCCTGTTCATCAC
ACCGCTGGCCGCCATCTCGGGCTGGCTGTGCCTGCGCGGGGCCCAGGACCACCTCCGGCT
CCACAGCCGGCTGGAAGCCGTGGGGCTCATCGCCCTCACCATCGCCCTCTTCACCATCTA
TGTCCTCTGGACACTGGTCTCATTCCGCTACCATTGCCAGCTGTACTCCGAATGGAGAAG
AACCAACCAGAAAGTGCGCCTGAAGATCCGGACCTCTGATGGCTCTGAGGGCACCCAACA
CTCCCCGCTGGCCGCTGGACTCCTGAAGAAAGTGGCAGAGGAGACACCTGTGTGAAGGCT
GGGCTGGCAGGACCAGAGGCAGCTGGCAATGCCCTGGAATTTGGAAGGACAGCCACGGCC
CGACCCTTCCTGCACGGCCAGAACGCTTCTTAGGCCAAGAGATGCCAAGCAGAGCCGATT
CTGTGATCCCGTGCGAAAAAAATAGCATCAGATCATCTTGCACTGTCTTGTACTCGAGGA
GGATGGATGGACGTGGTCCCGAGCTTCGGATGGACCAGGTACCCTGATCTCATTCTGAGG
TCCACCTACTGGGCCAGCAGCCGTGGCCAGAGGCGAGCTGAGAGCACCTACTGGGCCGGG
ATGTTCTGCAAGCTTCTTGCACTTTTCCGCACCTGGCAGGCTCACTTTCCTGGCACCCTC
GACTTTATAAAGTTGCACACCACGTTTCAAAAACCCACCCTGGAATGAATAAAAGGAGCC
CTTGCTGGACAAAATGGACTTGTCAGTCACATGTTTCCGAGGCCTCAAAATGGGACCCTG
GGACCCAGGGGAGGCAGGGACCACACAGGTAACAGAGCAACAGCAAATGCTCTCGGCTGG
TTTGAGGGATCTGTTGTGAAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAGGGGCCTGCGCGGCTGCCCGGCCCGGCCGCGGATCAGGCTCCTGGGACCATGGGC
CTTGGGCCCTGAGGACGTGGGGCTCCCTGTGGCCATGACGACGGGTGACTGCTGTCACCT
CCCTGGCTCCCTGTGTGACTGCTCTGACAGCCCTGCCTTCTCCAAGGTTGTGGAGGCCAC
GGGCCTTGGGCCACCCCAGTATGTGGCCCAGGTGACTTCAAGGGACGGCCGGCTCCTCTC
CACTGTCATCCGGGCCTTGGACACGCCGAGTGATGGTCCCTTCTGCCGGATCTGCCATGA
GGGAGCGAATGGGGAGAGCTTGCTGTCTCCTTGTGGTTGCACTGGCACACTGGGCGCCGT
GCACAAGAGCTGTCTGGAGAGGTGGCTTTCCTCATCCAACACCAGCTACTGTGAGCTGTG
CCACACGGAGTTTGCAGTGGAGAAGCGGCCCCGGCCCCTCACAGAGTGGCTGAAGGACCC
AGGGCCTCGGACAGAGAAGCGGACGCTGTGCTGTGACATGGTTTGCTTCCTGTTCATCAC
ACCGCTGGCCGCCATCTCGGGCTGGCTGTGCCTGCGCGGGGCCCAGGACCACCTCCGGCT
CCACAGCCGGCTGGAAGCCGTGGGGCTCATCGCCCTCACCATCGCCCTCTTCACCATCTA
TGTCCTCTGGACACTGGTCTCATTCCGCTACCATTGCCAGCTGTACTCCGAATGGAGAAG
AACCAACCAGAAAGTGCGCCTGAAGATCCGGACCTCTGATGGCTCTGAGGGCACCCAACA
CTCCCCGCTGGCCGCTGGACTCCTGAAGAAAGTGGCAGAGGAGACACCTGTGTGAAGGCT
GGGCTGGCAGGACCAGAGGCAGCTGGCAATGCCCTGGAATTTGGAAGGACAGCCACGGCC
CGACCCTTCCTGCACGGCCAGAACGCTTCTTAGGCCAAGAGATGCCAAGCAGAGCCGATT
CTGTGATCCCGTGCGAAAAAAATAGCATCAGATCATCTTGCACTGTCTTGTACTCGAGGA
GGATGGATGGACGTGGTCCCGAGCTTCGGATGGACCAGGTACCCTGATCTCATTCTGAGG
TCCACCTACTGGGCCAGCAGCCGTGGCCAGAGGCGAGCTGAGAGCACCTACTGGGCCGGG
ATGTTCTGCAAGCTTCTTGCACTTTTCCGCACCTGGCAGGCTCACTTTCCTGGCACCCTC
GACTTTATAAAGTTGCACACCACGTTTCAAAAACCCACCCTGGAATGAATAAAAGGAGCC
CTTGCTGGACAAAATGGACTTGTCAGTCACATGTTTCCGAGGCCTCAAAATGGGACCCTG
GGACCCAGGGGAGGCAGGGACCACACAGGTAACAGAGCAACAGCAAATGCTCTCGGCTGG
TTTGAGGGATCTGTTGTGAAACAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|58652038|dbj|BAD89359.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|58652038|dbj|BAD89359.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               143-262, - strand, RNAz p=0.632052
               

               
               1033-1217, - strand, RNAz p=0.992056

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-262, - strand, RNAz p=0.632052
               

               
               1033-1217, - strand, RNAz p=0.992056

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               23-277, gnl|bosTau2|chr7 (12006295-12006550)
               

               
               23-277, gnl|Hg17|chr19 (8392654-8392909)
               

               
               23-277, gnl|Mm7|chr17 (31784665-31784410)
               


               
               676-1401, gnl|bosTau2|chr7 (12015202-12015953)
               

               
               676-1401, gnl|Hg17|chr19 (8409271-8410649)
               

               
               676-1401, gnl|Mm7|chr17 (31766799-31766107)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-277, gnl|bosTau2|chr7 (12006295-12006550)
               

               
               23-277, gnl|Hg17|chr19 (8392654-8392909)
               

               
               23-277, gnl|Mm7|chr17 (31784665-31784410)
               


               
               676-1401, gnl|bosTau2|chr7 (12015202-12015953)
               

               
               676-1401, gnl|Hg17|chr19 (8409271-8410649)
               

               
               676-1401, gnl|Mm7|chr17 (31766799-31766107)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               csp (0.322373)
               

               
               che (0.272628)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               che (0.272628)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	143-262, - strand, RNAz p=0.632052
	1033-1217, - strand, RNAz p=0.992056

	23-277, gnl\|bosTau2\|chr7 (12006295-12006550)
	23-277, gnl\|Hg17\|chr19 (8392654-8392909)
	23-277, gnl\|Mm7\|chr17 (31784665-31784410)

	676-1401, gnl\|bosTau2\|chr7 (12015202-12015953)
	676-1401, gnl\|Hg17\|chr19 (8409271-8410649)
	676-1401, gnl\|Mm7\|chr17 (31766799-31766107)

	csp (0.322373)
	che (0.272628)
	ebs (0.236602)
	tes (0.207814)
	fcc (0.197785)
	cmu (0.186393)
	fbs (0.175346)
	cje (0.165235)
	cli (0.152812)
	spl (0.143184)
	lnt (0.142308)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	nbm (0.0993246)