Ss1.1-rnbm37b_b12.5
|
TATGAGGATTGGCCATGTGACTGAGCGGCTGGATGGCAGCACAGACATCACCTTTCCTGA
TGGAGACCAGGAGCTGGACCTGGGATCAGCAGGTGGACGTCTGCAGCTCATGGCCAAGTT
GGCAGAAGGCTCTGGAATCCAGCTGCCAACCACTGCTGCCGCTGCCGCTGCCCAAGCTGC
TGCCTTGCAGCTGAATGGAGCAGTTCCTTTGGGGGCCCTGAACCCAGCAGCTCTGACTGC
TCTGAGTCCGGCCCTGAACCTGGCCTCCCAGGCAATCGCCTCCCAATGCTTCCAGCTTTC
CAGCCTTTTTACCCCCCAGACCATGTAAACCAGTGGCGAGGTCCGATCCCTCGCTGTGCC
TCTGGGTCCTGCTACTCCCTTCTCCACATCTACCCTTCCACGTCTCCTTCTATCCATTTT
GTGGACCAAGCCATCCTGAGGGCATGAACATTGATGGTGGGGGAACTGGGGCCCCCCCTT
AGACACCAAGAAGAGCTCCTGCCCATGGCCCCACTGGGAATGGACTCTGCTGAGGAAAGC
TGCTGTTTGAAGAGAACAGAGTCTACACTTGGGGTTGAACATCTGTTTCTCTGTATTTAT
CATCTCCTGGGATGTCCTTCATTGTGCTTTCTAGCCACCTTAGTGATTCCTTGATTCCTC
CCCCGTTGGGAAGGCCATAGGGCATTAACTGAAGGAACTAACTGCTCTCTTCCTATACCT
TTACCCTACATTCTGTCACAGAAAACCCTTAAGACCTCTGGTCTCTGAGGGCTTTGGACT
TTGAGGGGGTGAACCTCAAAGGTGCTGACGGGCCTTGAAGTCTAGTGTAGACGTGTCCGT
TGGGCAGCCTGCCTTAGACCTTGGCTTGGGGCCAGAGCTGCTACTGGGGGCTTAGCATCT
TGCTGGGATGTGTGGGAATGATCTGTCCTGCCAGCTGGTTTGGATGTCTTAGGGGCATTC
AGGAGCTGAGTGAAAGGTGAGGTGCCTTTCCAGTATCTTCCACCTTCCTTTGTGTAGTTG
TCCTTCCTTTTGGCCCAGGGTGGGAGGATAGACTGGAGGCTGCTTCTCTCCACCACTTCC
ATGTGCCTCTGGAGATTGTGGGCTCAAGCCCAGCTGTTAAAGCCACTCCTGTCCCCTAGC
TGGGCACACGTGAGCCCTTTTCACTTCTCACTGGATTTTATACCCTGTGTCTGTGTACAT
AAATATATATATATATATAAACTTTGTACAAAAGGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TATGAGGATTGGCCATGTGACTGAGCGGCTGGATGGCAGCACAGACATCACCTTTCCTGA
TGGAGACCAGGAGCTGGACCTGGGATCAGCAGGTGGACGTCTGCAGCTCATGGCCAAGTT
GGCAGAAGGCTCTGGAATCCAGCTGCCAACCACTGCTGCCGCTGCCGCTGCCCAAGCTGC
TGCCTTGCAGCTGAATGGAGCAGTTCCTTTGGGGGCCCTGAACCCAGCAGCTCTGACTGC
TCTGAGTCCGGCCCTGAACCTGGCCTCCCAGGCAATCGCCTCCCAATGCTTCCAGCTTTC
CAGCCTTTTTACCCCCCAGACCATGTAAACCAGTGGCGAGGTCCGATCCCTCGCTGTGCC
TCTGGGTCCTGCTACTCCCTTCTCCACATCTACCCTTCCACGTCTCCTTCTATCCATTTT
GTGGACCAAGCCATCCTGAGGGCATGAACATTGATGGTGGGGGAACTGGGGCCCCCCCTT
AGACACCAAGAAGAGCTCCTGCCCATGGCCCCACTGGGAATGGACTCTGCTGAGGAAAGC
TGCTGTTTGAAGAGAACAGAGTCTACACTTGGGGTTGAACATCTGTTTCTCTGTATTTAT
CATCTCCTGGGATGTCCTTCATTGTGCTTTCTAGCCACCTTAGTGATTCCTTGATTCCTC
CCCCGTTGGGAAGGCCATAGGGCATTAACTGAAGGAACTAACTGCTCTCTTCCTATACCT
TTACCCTACATTCTGTCACAGAAAACCCTTAAGACCTCTGGTCTCTGAGGGCTTTGGACT
TTGAGGGGGTGAACCTCAAAGGTGCTGACGGGCCTTGAAGTCTAGTGTAGACGTGTCCGT
TGGGCAGCCTGCCTTAGACCTTGGCTTGGGGCCAGAGCTGCTACTGGGGGCTTAGCATCT
TGCTGGGATGTGTGGGAATGATCTGTCCTGCCAGCTGGTTTGGATGTCTTAGGGGCATTC
AGGAGCTGAGTGAAAGGTGAGGTGCCTTTCCAGTATCTTCCACCTTCCTTTGTGTAGTTG
TCCTTCCTTTTGGCCCAGGGTGGGAGGATAGACTGGAGGCTGCTTCTCTCCACCACTTCC
ATGTGCCTCTGGAGATTGTGGGCTCAAGCCCAGCTGTTAAAGCCACTCCTGTCCCCTAGC
TGGGCACACGTGAGCCCTTTTCACTTCTCACTGGATTTTATACCCTGTGTCTGTGTACAT
AAATATATATATATATATAAACTTTGTACAAAAGGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-129, gnl|bosTau2|chr10 (14123845-14123973) |
|
1-129, gnl|canFam2|chr8 (6238458-6238670) |
|
1-129, gnl|danRer3|chr8 (33731100-33731344) |
|
1-129, gnl|dasNov1|scaffold_47024 (5634-5428) |
|
1-129, gnl|echTel1|scaffold_173918 (4030-3809) |
|
1-129, gnl|fr1|chrUn (81198299-81198076) |
|
1-129, gnl|hg17|chr14 (22441221-22441445) |
|
1-129, gnl|Hg17|chr14 (22441363-22441235) |
|
1-129, gnl|loxAfr1|scaffold_40314 (5997-5773) |
|
1-129, gnl|mm7|chr2 (155899892-155900111) |
|
1-129, gnl|Mm7|chr2 (155900031-155899894) |
|
1-129, gnl|monDom2|scaffold_12 (26942786-26942563) |
|
1-129, gnl|oryCun1|scaffold_203420 (8101-7878) |
|
1-129, gnl|panTro1|chr15 (21405019-21405243) |
|
1-129, gnl|rheMac2|chr7 (85719885-85720109) |
|
1-129, gnl|rn3|chr15 (32574860-32575066) |
|
1-129, gnl|tetNig1|chr9 (6341172-6341400) |
|
1-129, gnl|xenTro1|scaffold_963 (283178-283413) |
| |
|
322-1219, gnl|bosTau2|chr10 (14124444-14125322) |
|
322-1219, gnl|Hg17|chr14 (22440785-22439841) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-129, gnl|bosTau2|chr10 (14123845-14123973) |
|
1-129, gnl|canFam2|chr8 (6238458-6238670) |
|
1-129, gnl|danRer3|chr8 (33731100-33731344) |
|
1-129, gnl|dasNov1|scaffold_47024 (5634-5428) |
|
1-129, gnl|echTel1|scaffold_173918 (4030-3809) |
|
1-129, gnl|fr1|chrUn (81198299-81198076) |
|
1-129, gnl|hg17|chr14 (22441221-22441445) |
|
1-129, gnl|Hg17|chr14 (22441363-22441235) |
|
1-129, gnl|loxAfr1|scaffold_40314 (5997-5773) |
|
1-129, gnl|mm7|chr2 (155899892-155900111) |
|
1-129, gnl|Mm7|chr2 (155900031-155899894) |
|
1-129, gnl|monDom2|scaffold_12 (26942786-26942563) |
|
1-129, gnl|oryCun1|scaffold_203420 (8101-7878) |
|
1-129, gnl|panTro1|chr15 (21405019-21405243) |
|
1-129, gnl|rheMac2|chr7 (85719885-85720109) |
|
1-129, gnl|rn3|chr15 (32574860-32575066) |
|
1-129, gnl|tetNig1|chr9 (6341172-6341400) |
|
1-129, gnl|xenTro1|scaffold_963 (283178-283413) |
| |
|
322-1219, gnl|bosTau2|chr10 (14124444-14125322) |
|
322-1219, gnl|Hg17|chr14 (22440785-22439841) |
|
med (0.232504) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ill (0.175593) |
|
ton (0.1755) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
med (0.232504) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ill (0.175593) |
|
ton (0.1755) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
