Non-Coding RNA Search

Ss1.1-rnbm38b_f1.5

Sequence:


               
               GGGGTCAAGCCTGGGAGGTACAGGAGCAGCTGAAGGACCAGCTGGCGGCTTCATGGTGGT
GGCTGGGGGCAGCAGTAGCGGCAATTGCGGGGAGGCGGCCTCAGGCTTAACACTGGGCCC
CCCTGGTACTGCCCACCTCTACCAAGGCCTGGGCCCCGTGGTGCTGTCAGGGCCAGTTAG
CCACCTCATGCCTTTCCCGGGACCCCTGCTAGGCTCACCCACAGGCTCCTTCACCACAGG
CCCAGTGCCTCCCACCACCACCACCACTGTGGTGGCCCCGCTCAGCTCGTGAGGGCACAG
AGCATGGCCTCGGAGCAGGGGTGGCACCCCTCTCCTCTTGTAGCCGGCAAGTCTGTCCAA
CCCAACCCTCTGGGCCCCAGACAACCCCTGGCCTGGACCTTCAAAGCTTTTGTAAAATAA
AACTACCGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTCAAGCCTGGGAGGTACAGGAGCAGCTGAAGGACCAGCTGGCGGCTTCATGGTGGT
GGCTGGGGGCAGCAGTAGCGGCAATTGCGGGGAGGCGGCCTCAGGCTTAACACTGGGCCC
CCCTGGTACTGCCCACCTCTACCAAGGCCTGGGCCCCGTGGTGCTGTCAGGGCCAGTTAG
CCACCTCATGCCTTTCCCGGGACCCCTGCTAGGCTCACCCACAGGCTCCTTCACCACAGG
CCCAGTGCCTCCCACCACCACCACCACTGTGGTGGCCCCGCTCAGCTCGTGAGGGCACAG
AGCATGGCCTCGGAGCAGGGGTGGCACCCCTCTCCTCTTGTAGCCGGCAAGTCTGTCCAA
CCCAACCCTCTGGGCCCCAGACAACCCCTGGCCTGGACCTTCAAAGCTTTTGTAAAATAA
AACTACCGGAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-316, - strand, RNAz p=0.981909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-316, - strand, RNAz p=0.981909

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-432, gnl|bosTau2|chrX (26329287-26328855)
               

               
               1-432, gnl|Hg17|chrX (48408529-48408960)
               

               
               1-432, gnl|Mm7|chrX (6393198-6392458)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chrX (26329287-26328855)
               

               
               1-432, gnl|Hg17|chrX (48408529-48408960)
               

               
               1-432, gnl|Mm7|chrX (6393198-6392458)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nbm (0.297974)
               

               
               fty (0.17584)
               

               
               eli (0.151814)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.297974)
               

               
               fty (0.17584)
               

               
               eli (0.151814)

	1-432, gnl\|bosTau2\|chrX (26329287-26328855)
	1-432, gnl\|Hg17\|chrX (48408529-48408960)
	1-432, gnl\|Mm7\|chrX (6393198-6392458)