Non-Coding RNA Search

Ss1.1-rnbm38b_j20.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTGGGGGGGTGGCAACACTTTATTAGGTTGGGGCAGCCAGGAAG
CAAAGTGGAACGAGCAGAGGCACGTGGGGGACGGGGCTCCAGGGCCCGGCCCCAGGCTCA
GTGCTCTCCATTCAGGGCCATGGAGGGGGCAGCGTAGGTCTGGAAGCGCTGGTGGGCCCG
CTGGTACGTGAGCAGTCTCAGGGACATGGTGTCCACGGCCGCCTCCAGCCCCGGCTCCTG
GGTGATCTCTACCGTGTAGTCATTGGCCAGCTGCAGGGAGGCCAACATGGAGCGACACAC
CTCAAAGGCAGGCTGGCCAGCCACCAGCTCCGCAAAGGGACACCACTGGTTGAGCTGGCT
GAACCTGGAGACCACCTGGTCCCCATAGGTGTGGATGTCAAAGGGCACACGCTGCTCCTG
CTCCTGGAGCAGGGGCTGGACCGTCTCTTCCCAGTCCCTGATGCGCTGGCTCAGCTCTGT
CTCCTGGACGAACTTCTGCGAGGAGGTGATGAACAGCTCCACATTCCTTCGAACCAGCTC
CTCATAGCTGAGGGACGTCGGCATGGCTTCCGCTTCCAGGTCTGCATCTTCCCCAGGCTT
TGCCCCCTCGGGCTCTGCGTACTCCTCGGGCTCTAGAAAGTCATCTGCCACTCCCAGATC
CTCCAGGGAGTCCTCCAGGCGGTCCTCCTCCACAGGCCACAGCCCCTCCTCCTCGGCCCT
TGGCAGCCACCGCTCGGCCATCTCCCTCCTCTGCAGCCTCCGGAGGGTCTCCAGCTGCTC
CCTCACGTGCTTCCAGTATAGGGCCTCCATGTCTGCAAAGGAGGGGCCCTTCCGCCGGGG
CCTCCTACTGTCAGTGTGGTCTGCGTAGGCGGCCAGGTACCACTGGTGGAAATCCTGCAG
CTTGGCAGCACCTTTCCTCTTACGCTTCTGTCCTGGAGCCTCCTCCACAGAGGGGGGCAC
AGAGTAGGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTGGGGGGGTGGCAACACTTTATTAGGTTGGGGCAGCCAGGAAG
CAAAGTGGAACGAGCAGAGGCACGTGGGGGACGGGGCTCCAGGGCCCGGCCCCAGGCTCA
GTGCTCTCCATTCAGGGCCATGGAGGGGGCAGCGTAGGTCTGGAAGCGCTGGTGGGCCCG
CTGGTACGTGAGCAGTCTCAGGGACATGGTGTCCACGGCCGCCTCCAGCCCCGGCTCCTG
GGTGATCTCTACCGTGTAGTCATTGGCCAGCTGCAGGGAGGCCAACATGGAGCGACACAC
CTCAAAGGCAGGCTGGCCAGCCACCAGCTCCGCAAAGGGACACCACTGGTTGAGCTGGCT
GAACCTGGAGACCACCTGGTCCCCATAGGTGTGGATGTCAAAGGGCACACGCTGCTCCTG
CTCCTGGAGCAGGGGCTGGACCGTCTCTTCCCAGTCCCTGATGCGCTGGCTCAGCTCTGT
CTCCTGGACGAACTTCTGCGAGGAGGTGATGAACAGCTCCACATTCCTTCGAACCAGCTC
CTCATAGCTGAGGGACGTCGGCATGGCTTCCGCTTCCAGGTCTGCATCTTCCCCAGGCTT
TGCCCCCTCGGGCTCTGCGTACTCCTCGGGCTCTAGAAAGTCATCTGCCACTCCCAGATC
CTCCAGGGAGTCCTCCAGGCGGTCCTCCTCCACAGGCCACAGCCCCTCCTCCTCGGCCCT
TGGCAGCCACCGCTCGGCCATCTCCCTCCTCTGCAGCCTCCGGAGGGTCTCCAGCTGCTC
CCTCACGTGCTTCCAGTATAGGGCCTCCATGTCTGCAAAGGAGGGGCCCTTCCGCCGGGG
CCTCCTACTGTCAGTGTGGTCTGCGTAGGCGGCCAGGTACCACTGGTGGAAATCCTGCAG
CTTGGCAGCACCTTTCCTCTTACGCTTCTGTCCTGGAGCCTCCTCCACAGAGGGGGGCAC
AGAGTAGGGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61873388|ref|XP_596403.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873388|ref|XP_596403.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               114-228, + strand, RNAz p=0.549534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-228, + strand, RNAz p=0.549534

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-268, gnl|bosTau2|chr5 (75768359-75768624)
               

               
               18-268, gnl|Hg17|chr22 (49252048-49251807)
               

               
               18-268, gnl|Mm7|chr15 (89454461-89454188)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-268, gnl|bosTau2|chr5 (75768359-75768624)
               

               
               18-268, gnl|Hg17|chr22 (49252048-49251807)
               

               
               18-268, gnl|Mm7|chr15 (89454461-89454188)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nbm (0.297974)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               eep (0.122564)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.297974)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               eep (0.122564)

	18-268, gnl\|bosTau2\|chr5 (75768359-75768624)
	18-268, gnl\|Hg17\|chr22 (49252048-49251807)
	18-268, gnl\|Mm7\|chr15 (89454461-89454188)

	nbm (0.297974)
	nlu (0.191681)
	fhi (0.169578)
	pty (0.142714)
	eep (0.122564)