Non-Coding RNA Search

Ss1.1-rnbm38b_l10.5

Sequence:


               
               CTGGCCTGACAGACCATGCAGGTGATCACACAGAAGTGACAAGAAACATGCACGATGCCG
ACCCTCAGAGCTGATGCTATTGTACTTGCACATTGAGAACTGAAAGGAAGGAATTGTGAT
TAAACTAAAAGCTGGAGAGGTAAATTAAGGCAGAACCAAAATGAGCTAAGTTGCATATAT
ATATACATATATATATATATATATATTTTAAAAAAGACACTGTTTACTGCAGTTACTCAG
GAACTGCTTTTGATTCACATTAAGCTGCTTTCAGAAATTAAAAAAAGAAAACAACACTTT
TTAAAAGGGTGCATTGATAAAATCTGAGGTTTTTGATTTTGGTTTTTGGCTTTGTTTTGT
TTTGTTTTGTTTTCTGTGTAAATTTTTTTTCCTAAGTTTATGGCACAGGGTACACCTTAA
GTATTTCTCCATCTTCCACTTGGATCCTCAAGTTTTGCTGAATTCTAGTTGTACCTTATA
TCAGCACGTTAAAGACAGTACTTTAAAGTAAAGCAGAGGGAGACTGTTGCTCAACCATCA
GGAAACAGTTGTAGTCAGAAGACATCATTGGTCCTGTGTTTCCTACGGAAATAAGAAACA
ATAAATATTGCACTGAATGTTTGTGGTTTGGAGTCCCTACATGATAAAGGGGCAATATAT
TTGCAGCAAATTGTGTGAGGTTTTAATGCAGAATTTTGTCAGAAGACAATGGCGCTGCAT
GTTTTTCTTTGAGTGCAAATGTACATTGCTAAGATTTTTTTTAAGATGGCATGTGCTTTG
AAATGAGGAAATTGCATTTTTAAGAGTTTAAAAATCTTATGAGTGAGAAATACAAGAAAT
CTTACTTATTTTCACCTCTTTAGGAAAAAATAAAAGATGTTTCTCATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCTGACAGACCATGCAGGTGATCACACAGAAGTGACAAGAAACATGCACGATGCCG
ACCCTCAGAGCTGATGCTATTGTACTTGCACATTGAGAACTGAAAGGAAGGAATTGTGAT
TAAACTAAAAGCTGGAGAGGTAAATTAAGGCAGAACCAAAATGAGCTAAGTTGCATATAT
ATATACATATATATATATATATATATTTTAAAAAAGACACTGTTTACTGCAGTTACTCAG
GAACTGCTTTTGATTCACATTAAGCTGCTTTCAGAAATTAAAAAAAGAAAACAACACTTT
TTAAAAGGGTGCATTGATAAAATCTGAGGTTTTTGATTTTGGTTTTTGGCTTTGTTTTGT
TTTGTTTTGTTTTCTGTGTAAATTTTTTTTCCTAAGTTTATGGCACAGGGTACACCTTAA
GTATTTCTCCATCTTCCACTTGGATCCTCAAGTTTTGCTGAATTCTAGTTGTACCTTATA
TCAGCACGTTAAAGACAGTACTTTAAAGTAAAGCAGAGGGAGACTGTTGCTCAACCATCA
GGAAACAGTTGTAGTCAGAAGACATCATTGGTCCTGTGTTTCCTACGGAAATAAGAAACA
ATAAATATTGCACTGAATGTTTGTGGTTTGGAGTCCCTACATGATAAAGGGGCAATATAT
TTGCAGCAAATTGTGTGAGGTTTTAATGCAGAATTTTGTCAGAAGACAATGGCGCTGCAT
GTTTTTCTTTGAGTGCAAATGTACATTGCTAAGATTTTTTTTAAGATGGCATGTGCTTTG
AAATGAGGAAATTGCATTTTTAAGAGTTTAAAAATCTTATGAGTGAGAAATACAAGAAAT
CTTACTTATTTTCACCTCTTTAGGAAAAAATAAAAGATGTTTCTCATAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               151-250, - strand, RNAz p=0.997851

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-250, - strand, RNAz p=0.997851

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-355, gnl|bosTau2|chr29 (18458279-18457932)
               

               
               1-355, gnl|Hg17|chr11 (18344059-18344418)
               

               
               1-355, gnl|Mm7|chr7 (42999176-42999529)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-355, gnl|bosTau2|chr29 (18458279-18457932)
               

               
               1-355, gnl|Hg17|chr11 (18344059-18344418)
               

               
               1-355, gnl|Mm7|chr7 (42999176-42999529)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               amn (0.417711)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

	1-355, gnl\|bosTau2\|chr29 (18458279-18457932)
	1-355, gnl\|Hg17\|chr11 (18344059-18344418)
	1-355, gnl\|Mm7\|chr7 (42999176-42999529)

	amn (0.417711)
	tes (0.415628)
	lyg (0.399308)
	fco (0.314416)
	cte (0.29274)
	tra (0.246184)
	rec (0.17307)
	ski (0.146735)
	pla (0.133672)
	thg (0.126791)
	ese (0.126502)
	nbm (0.0993246)