Ss1.1-rnbm39b_m13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCAATGCTTACAATAGCATCCGGTCTAAAGTGGAGCTGTCCGTCTGGGATCAGCCTGAG GATCTTAATCTCTTCTTCACTGCTACCTGCCAGGACGGCATATCCTACCCTGGTCAGAGG AAGTGTGAGGGCCTGAAGATCGGGGACACGGCATCCTTTGAGGTGTCAGTGGAGGCCCGG AGCTGCCCGGGCAAACACGCACAGCACACGTTCACCCTGCGGCCCGTGGGCTTCCGGGAC AGCCTGGAGGTGGGAGTCACCTACAACTGCAGGTGCGGCTGCAGTGTGAGGCTGGAGCCC AACAGCGCCAGGTGCAGCGGCAACGGGACTTATGTCTGCGGCCTGTGCGAGTGCAACCCC AGCTACCTGGGCACCAGGTGCGAGTGCCAGGAAGGGGAGAGACAGAGCGGGTACCAGAAC CTGTGCCGGGAAGCGGAGGGCAAGCCGCTGTGTAGCGGCCGTGGGCAGTGCAGCTGCAAC CAGTGCTCCTGCTTCGAGAGCGAGTTCGGGAAGATCTACGGGCGCTTCTGCGAGTGTGAC AACTTCTCCTGCGCCAGGAACAAAGGAGTTCTCTGCTCAGGCCATGGCGAGTGTCACTGT GGAGAATGCAAGTGCCACGCAGGTTATATTGGGGACAACTGTAACTGCTCAACAGACATC AGCACATGCCAGGCCAGGGATGGCCAGATCTGCAGCGACCGGGGGCACTGTGTCTGTGGG CAGTGCCAGTGCACGGAGCCAGGGGCCTTTGGGGAGAAGTGTGAGAAATGCCCGACCTGC CCTGACGCCTGCAGCACCAAGAGAGATTGTGTCGAGTGTTTGCTGCTTCACTCCGGAAGC TCAGCTGACAACCAGACCTGCCAAAACCTGTGCAAGGACGAGGTGATCACACGGGTGGAC ACCATCGTGAAAGATGACCAGGAGGCTGTGCTTTGTTTCTACAAAACCGCCAAGGATTGT GTGATGATGTTCACCTATGCAGAGCTGCCCAGCGGCAAGTCCAACTTGACGGTCCTCAAG GAGCCAGAGTGTGGAACTGCGCCCAATGCCATGACCATCCTCCTGGCTGTGGTTGGCAGC ATCCTCCTGATTGGGATTGCGCTCCTGGCCATCTGGAAGCTGCTCGTCACCATCCACGAC CGGAGAGAGTTTGCAAAGTTCCAGAGTGAGCGATCCAGAGCCCGCTACGAAATGGCTTCG AACCCTCTGTACAGAAAGCCCATCTCCACACACAACGTGGATTTCACCTTCAACAAGTTC AACAAGTCCTACAATGGCACAGTGGACTGACGGCTCCTTCTCAGAGGGCTGGGGGGTGAG TCTTCAAGCCAGAGACTTGACACACCTTCGACAGCTGCTCGGCTTGATCACGGCTCCCTG CAAGGCCAAGCGCAAAGACCTTCCGGCCAGCCTGGGCCAGGAGCCCGCTCCCCGCACAGG AAGGCGCCCAACCACACCACCTGGCCAGCCCTCCAAGCCCAGGGGACTTTGGCCCTCTCG GCTTTCCTCTGCACAGCCAGCTTGTCTTCTCACTGAACTGCTGAGATGCTGGGCTGCCTC TCCCTCCCGGAAGGGATTCTGAGTCCTGAGAATTACCCGCCTGGTGTCTCTGCCTGGCAC ATGGGTGTTGGTGATGGGATTATTGAGACACCTGTTAAAGGCACATAGTTGGCAAATGTC ACCTTCCTTCTCCTGTCCATGTTTGTTTAGTATTTTTGTAATGAAAAGGAAAGAGATTGG GATTGAAAGTAAAGATTAAAACCAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCAATGCTTACAATAGCATCCGGTCTAAAGTGGAGCTGTCCGTCTGGGATCAGCCTGAG GATCTTAATCTCTTCTTCACTGCTACCTGCCAGGACGGCATATCCTACCCTGGTCAGAGG AAGTGTGAGGGCCTGAAGATCGGGGACACGGCATCCTTTGAGGTGTCAGTGGAGGCCCGG AGCTGCCCGGGCAAACACGCACAGCACACGTTCACCCTGCGGCCCGTGGGCTTCCGGGAC AGCCTGGAGGTGGGAGTCACCTACAACTGCAGGTGCGGCTGCAGTGTGAGGCTGGAGCCC AACAGCGCCAGGTGCAGCGGCAACGGGACTTATGTCTGCGGCCTGTGCGAGTGCAACCCC AGCTACCTGGGCACCAGGTGCGAGTGCCAGGAAGGGGAGAGACAGAGCGGGTACCAGAAC CTGTGCCGGGAAGCGGAGGGCAAGCCGCTGTGTAGCGGCCGTGGGCAGTGCAGCTGCAAC CAGTGCTCCTGCTTCGAGAGCGAGTTCGGGAAGATCTACGGGCGCTTCTGCGAGTGTGAC AACTTCTCCTGCGCCAGGAACAAAGGAGTTCTCTGCTCAGGCCATGGCGAGTGTCACTGT GGAGAATGCAAGTGCCACGCAGGTTATATTGGGGACAACTGTAACTGCTCAACAGACATC AGCACATGCCAGGCCAGGGATGGCCAGATCTGCAGCGACCGGGGGCACTGTGTCTGTGGG CAGTGCCAGTGCACGGAGCCAGGGGCCTTTGGGGAGAAGTGTGAGAAATGCCCGACCTGC CCTGACGCCTGCAGCACCAAGAGAGATTGTGTCGAGTGTTTGCTGCTTCACTCCGGAAGC TCAGCTGACAACCAGACCTGCCAAAACCTGTGCAAGGACGAGGTGATCACACGGGTGGAC ACCATCGTGAAAGATGACCAGGAGGCTGTGCTTTGTTTCTACAAAACCGCCAAGGATTGT GTGATGATGTTCACCTATGCAGAGCTGCCCAGCGGCAAGTCCAACTTGACGGTCCTCAAG GAGCCAGAGTGTGGAACTGCGCCCAATGCCATGACCATCCTCCTGGCTGTGGTTGGCAGC ATCCTCCTGATTGGGATTGCGCTCCTGGCCATCTGGAAGCTGCTCGTCACCATCCACGAC CGGAGAGAGTTTGCAAAGTTCCAGAGTGAGCGATCCAGAGCCCGCTACGAAATGGCTTCG AACCCTCTGTACAGAAAGCCCATCTCCACACACAACGTGGATTTCACCTTCAACAAGTTC AACAAGTCCTACAATGGCACAGTGGACTGACGGCTCCTTCTCAGAGGGCTGGGGGGTGAG TCTTCAAGCCAGAGACTTGACACACCTTCGACAGCTGCTCGGCTTGATCACGGCTCCCTG CAAGGCCAAGCGCAAAGACCTTCCGGCCAGCCTGGGCCAGGAGCCCGCTCCCCGCACAGG AAGGCGCCCAACCACACCACCTGGCCAGCCCTCCAAGCCCAGGGGACTTTGGCCCTCTCG GCTTTCCTCTGCACAGCCAGCTTGTCTTCTCACTGAACTGCTGAGATGCTGGGCTGCCTC TCCCTCCCGGAAGGGATTCTGAGTCCTGAGAATTACCCGCCTGGTGTCTCTGCCTGGCAC ATGGGTGTTGGTGATGGGATTATTGAGACACCTGTTAAAGGCACATAGTTGGCAAATGTC ACCTTCCTTCTCCTGTCCATGTTTGTTTAGTATTTTTGTAATGAAAAGGAAAGAGATTGG GATTGAAAGTAAAGATTAAAACCAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 229-348, - strand, RNAz p=0.575606 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 229-348, - strand, RNAz p=0.575606 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 150-581, gnl|bosTau2|chr1 (38327016-38327447) | |
| 150-581, gnl|Hg17|chr3 (125998355-125997924) | |
| 150-581, gnl|Mm7|chr16 (33594308-33594739) | |
| 907-1027, gnl|bosTau2|chr1 (38355262-38355382) | |
| 907-1027, gnl|canFam2|chr33 (30841138-30841278) | |
| 907-1027, gnl|danRer3|chr9 (15083186-15083321) | |
| 907-1027, gnl|dasNov1|scaffold_37407 (10438-10299) | |
| 907-1027, gnl|echTel1|scaffold_219145 (1930-2070) | |
| 907-1027, gnl|fr1|chrUn (201864110-201864243) | |
| 907-1027, gnl|galGal2|chr7 (28564943-28565073) | |
| 907-1027, gnl|hg17|chr3 (125967752-125967892) | |
| 907-1027, gnl|Hg17|chr3 (125967883-125967763) | |
| 907-1027, gnl|loxAfr1|scaffold_7742 (7040-6901) | |
| 907-1027, gnl|mm7|chr16 (33621146-33621006) | |
| 907-1027, gnl|Mm7|chr16 (33621013-33621133) | |
| 907-1027, gnl|monDom2|scaffold_24 (23518432-23518572) | |
| 907-1027, gnl|oryCun1|scaffold_52781 (1233-1373) | |
| 907-1027, gnl|panTro1|chr2 (127795953-127796093) | |
| 907-1027, gnl|rheMac2|chr2 (44764012-44764152) | |
| 907-1027, gnl|rn3|chr11 (68703163-68703303) | |
| 907-1027, gnl|tetNig1|chr2 (6789795-6789660) | |
| 907-1027, gnl|xenTro1|scaffold_1370 (171518-171648) | |
| 1194-1575, gnl|bosTau2|chr1 (38357483-38357856) | |
| 1194-1575, gnl|Hg17|chr3 (125965256-125964831) | |
| 1194-1575, gnl|Mm7|chr16 (33623179-33623560) | |
| 1577-1767, gnl|bosTau2|chr1 (38357982-38358170) | |
| 1577-1767, gnl|Hg17|chr3 (125964698-125964505) | |
| 1577-1767, gnl|Mm7|chr16 (33623678-33623863) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 150-581, gnl|bosTau2|chr1 (38327016-38327447) | |
| 150-581, gnl|Hg17|chr3 (125998355-125997924) | |
| 150-581, gnl|Mm7|chr16 (33594308-33594739) | |
| 907-1027, gnl|bosTau2|chr1 (38355262-38355382) | |
| 907-1027, gnl|canFam2|chr33 (30841138-30841278) | |
| 907-1027, gnl|danRer3|chr9 (15083186-15083321) | |
| 907-1027, gnl|dasNov1|scaffold_37407 (10438-10299) | |
| 907-1027, gnl|echTel1|scaffold_219145 (1930-2070) | |
| 907-1027, gnl|fr1|chrUn (201864110-201864243) | |
| 907-1027, gnl|galGal2|chr7 (28564943-28565073) | |
| 907-1027, gnl|hg17|chr3 (125967752-125967892) | |
| 907-1027, gnl|Hg17|chr3 (125967883-125967763) | |
| 907-1027, gnl|loxAfr1|scaffold_7742 (7040-6901) | |
| 907-1027, gnl|mm7|chr16 (33621146-33621006) | |
| 907-1027, gnl|Mm7|chr16 (33621013-33621133) | |
| 907-1027, gnl|monDom2|scaffold_24 (23518432-23518572) | |
| 907-1027, gnl|oryCun1|scaffold_52781 (1233-1373) | |
| 907-1027, gnl|panTro1|chr2 (127795953-127796093) | |
| 907-1027, gnl|rheMac2|chr2 (44764012-44764152) | |
| 907-1027, gnl|rn3|chr11 (68703163-68703303) | |
| 907-1027, gnl|tetNig1|chr2 (6789795-6789660) | |
| 907-1027, gnl|xenTro1|scaffold_1370 (171518-171648) | |
| 1194-1575, gnl|bosTau2|chr1 (38357483-38357856) | |
| 1194-1575, gnl|Hg17|chr3 (125965256-125964831) | |
| 1194-1575, gnl|Mm7|chr16 (33623179-33623560) | |
| 1577-1767, gnl|bosTau2|chr1 (38357982-38358170) | |
| 1577-1767, gnl|Hg17|chr3 (125964698-125964505) | |
| 1577-1767, gnl|Mm7|chr16 (33623678-33623863) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| jca (0.45584) | |
| amn (0.417711) | |
| nca (0.410621) | |
| cov (0.396458) | |
| eep (0.367692) | |
| sme (0.305437) | |
| cag (0.302389) | |
| hlv (0.278513) | |
| bla (0.248694) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nep (0.183925) | |
| spl (0.143184) | |
| pty (0.142714) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.45584) | |
| amn (0.417711) | |
| nca (0.410621) | |
| cov (0.396458) | |
| eep (0.367692) | |
| sme (0.305437) | |
| cag (0.302389) | |
| hlv (0.278513) | |
| bla (0.248694) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nep (0.183925) | |
| spl (0.143184) | |
| pty (0.142714) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |