Non-Coding RNA Search

Ss1.1-rnbm40b_l19.5

Sequence:


               
               TTGCTTGACTTTGAAAATGACTTGATCGAATCAAGCTGCAAAGTAACTAGCCCCACCACC
TATGTTTTGGATGAAGACGAACCTCGATTCCTTGAGGAAGTTGACTACAGCGCAGAAAGT
AACGATGAGTTAGATATTGAAGTGGCCGAAAACGCAGGAGACTATGAACCTTCTGCGCAA
GAAGAAGTACTTTCTGACTCTGAATTATCGCGAACATACCTGCCTTGAGCCCTTTGCGAT
CTCTTGTTAACTTGCAAAGAAGAAATTAACTATCTTGGGTTTTATTATACAGGAAGTTTG
AGAGACCTGAGTGTCCAGAGAGCCAACTCAGAAAGACAGAAAGCACCTCGGGCCTGTTTT
GGTTTCAAGACAATAAATGTGTTTATTAATTCATGATGAAATTGGCACTTGTTTTATTTT
AGATCTTCAGTGCACTTTACGTAGCATTGAAGTATCAACTATTGGATTTACTTTTTTTTT
TTTTTTTTTTTTAAAAACCAAAACCCCTGAGTATCACTGCATGAATTTTTATCTCCTTAT
GGCTATATACTGCATCAAATGGATAATTCTGAAGTGTGTGAGACTATCAAATCTAAATTC
TAGAGTTGTTGAGAATCCTGAGTTGTTGAAAACTTAATATATATGTACATGGATTCCTGT
AGATGTGTCTGTGTGTGGGGGGGGGTGGGTAAATATTGAAAAGAAGATTGTTCTTCAGAA
TCATGTTCACTGTTGAGTTGTGACTGAAATAATCCAGAGTTTGCCTTGAAAACATGACAT
TCTTCATTTACCAAATTAAATAAAAATATATTAAACTTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCTTGACTTTGAAAATGACTTGATCGAATCAAGCTGCAAAGTAACTAGCCCCACCACC
TATGTTTTGGATGAAGACGAACCTCGATTCCTTGAGGAAGTTGACTACAGCGCAGAAAGT
AACGATGAGTTAGATATTGAAGTGGCCGAAAACGCAGGAGACTATGAACCTTCTGCGCAA
GAAGAAGTACTTTCTGACTCTGAATTATCGCGAACATACCTGCCTTGAGCCCTTTGCGAT
CTCTTGTTAACTTGCAAAGAAGAAATTAACTATCTTGGGTTTTATTATACAGGAAGTTTG
AGAGACCTGAGTGTCCAGAGAGCCAACTCAGAAAGACAGAAAGCACCTCGGGCCTGTTTT
GGTTTCAAGACAATAAATGTGTTTATTAATTCATGATGAAATTGGCACTTGTTTTATTTT
AGATCTTCAGTGCACTTTACGTAGCATTGAAGTATCAACTATTGGATTTACTTTTTTTTT
TTTTTTTTTTTTAAAAACCAAAACCCCTGAGTATCACTGCATGAATTTTTATCTCCTTAT
GGCTATATACTGCATCAAATGGATAATTCTGAAGTGTGTGAGACTATCAAATCTAAATTC
TAGAGTTGTTGAGAATCCTGAGTTGTTGAAAACTTAATATATATGTACATGGATTCCTGT
AGATGTGTCTGTGTGTGGGGGGGGGTGGGTAAATATTGAAAAGAAGATTGTTCTTCAGAA
TCATGTTCACTGTTGAGTTGTGACTGAAATAATCCAGAGTTTGCCTTGAAAACATGACAT
TCTTCATTTACCAAATTAAATAAAAATATATTAAACTTAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26379228|dbj|BAC25412.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26379228|dbj|BAC25412.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               408-527, - strand, RNAz p=0.539905

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-527, - strand, RNAz p=0.539905

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-821, gnl|bosTau2|chr8 (42416944-42416206)
               

               
               49-821, gnl|Hg17|chr9 (85391757-85391015)
               

               
               49-821, gnl|Mm7|chr13 (58558741-58557966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-821, gnl|bosTau2|chr8 (42416944-42416206)
               

               
               49-821, gnl|Hg17|chr9 (85391757-85391015)
               

               
               49-821, gnl|Mm7|chr13 (58558741-58557966)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cte (0.58548)
               

               
               pgl (0.236967)
               

               
               nbm (0.198649)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               pgl (0.236967)
               

               
               nbm (0.198649)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	49-821, gnl\|bosTau2\|chr8 (42416944-42416206)
	49-821, gnl\|Hg17\|chr9 (85391757-85391015)
	49-821, gnl\|Mm7\|chr13 (58558741-58557966)

	cte (0.58548)
	pgl (0.236967)
	nbm (0.198649)
	ute (0.132784)
	ese (0.126502)
	bla (0.124347)
	ebs (0.118301)
	spc (0.113366)