Ss1.1-rnca01b_a5.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GCTGCCTTTGCACCATGACACCCCGGCTGCTCCCTCTGCTGCTGCTGCTCCTGGCCCGGC CTCCCGCCGCGCAGCCGACTCCCCCGACGTGCTACTCCAGGATGCTGGCCCTGAGCCGGG AGATCACCGCTGACTTCCAGAGGCTGCAGGCCACGGAGCCCTCGGAGCCTTGTGTGAGAT ACCTGCCCAGGCTGTACCTGGATATACACAACTACTGTGTGTTGGACAAGCTGCGGGACT TCGTGGCGTCACCCCAGTGTTGGAGAGTGGCCCAGGTAGACGCCCTGAAGGACAAGGTGC GGAAACTGTACACCATCATGAACTCGTTCTGCCGGAGAGACCTGGTGTTCCTATCAGATG ACTGCAATGCCTTGGAATACCCCATCCCAGTGACCACTGTCCGGCCGGATCCTCAGAGGC GGGACCCCGCAGCTCAGACCAGAGACAGAACCCGAGGGCACTGAAGCTCTCTCAGTGCCC AGACACAGTGGGCTGAAGCCACGGCCCCCACCGGTCTTCCTCTGTGTGTCCCTGCATCTT CTGGAAAGCGGTTGCCTCTGTTCCTCTCCTGGGGCTGGTTTTGAACATAGAAGCCTTGCC TCTGCTTCCCCCGGTTGTGTCTTGCCAGGTCGGTTAGATACACGAGCATGTTGATTTGAT CGCTGAGAAGCAAAGCAACTTCTCTTTTATGAACAATTAGCTTGAGAAGGAGCAAACGAG TGTGTTTGTAGTACTGCTTTAACGGAGGGGTGGGACCGTTTTTCGTGATGGATAGAAACC TGCTTATATTTAATCAAGCTTCTATTTTATACCCTCCACCGCCAACTCTGCTCCTTACAG ATATCTTCCATTTTTAAAGAAATGCCCCTGCCTCTAAGATGCATTGCAAGGTTCCTGATT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GCTGCCTTTGCACCATGACACCCCGGCTGCTCCCTCTGCTGCTGCTGCTCCTGGCCCGGC CTCCCGCCGCGCAGCCGACTCCCCCGACGTGCTACTCCAGGATGCTGGCCCTGAGCCGGG AGATCACCGCTGACTTCCAGAGGCTGCAGGCCACGGAGCCCTCGGAGCCTTGTGTGAGAT ACCTGCCCAGGCTGTACCTGGATATACACAACTACTGTGTGTTGGACAAGCTGCGGGACT TCGTGGCGTCACCCCAGTGTTGGAGAGTGGCCCAGGTAGACGCCCTGAAGGACAAGGTGC GGAAACTGTACACCATCATGAACTCGTTCTGCCGGAGAGACCTGGTGTTCCTATCAGATG ACTGCAATGCCTTGGAATACCCCATCCCAGTGACCACTGTCCGGCCGGATCCTCAGAGGC GGGACCCCGCAGCTCAGACCAGAGACAGAACCCGAGGGCACTGAAGCTCTCTCAGTGCCC AGACACAGTGGGCTGAAGCCACGGCCCCCACCGGTCTTCCTCTGTGTGTCCCTGCATCTT CTGGAAAGCGGTTGCCTCTGTTCCTCTCCTGGGGCTGGTTTTGAACATAGAAGCCTTGCC TCTGCTTCCCCCGGTTGTGTCTTGCCAGGTCGGTTAGATACACGAGCATGTTGATTTGAT CGCTGAGAAGCAAAGCAACTTCTCTTTTATGAACAATTAGCTTGAGAAGGAGCAAACGAG TGTGTTTGTAGTACTGCTTTAACGGAGGGGTGGGACCGTTTTTCGTGATGGATAGAAACC TGCTTATATTTAATCAAGCTTCTATTTTATACCCTCCACCGCCAACTCTGCTCCTTACAG ATATCTTCCATTTTTAAAGAAATGCCCCTGCCTCTAAGATGCATTGCAAGGTTCCTGATT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 38 entry(ies) | More info |
Aligned organism(s): 38 entry(ies) | Help | Less info |
1-165, gnl|bosTau2|chr6 (61154698-61154868) | |
1-165, gnl|canFam2|chr3 (73185375-73185650) | |
1-165, gnl|dasNov1|scaffold_8040 (2375-2059) | |
1-165, gnl|hg17|chr4 (5139087-5139377) | |
1-165, gnl|Hg17|chr4 (5139254-5139091) | |
1-165, gnl|loxAfr1|scaffold_21784 (4543-4280) | |
1-165, gnl|mm7|chr5 (36817112-36816807) | |
1-165, gnl|Mm7|chr5 (36816935-36817106) | |
1-165, gnl|monDom2|scaffold_10 (32394567-32394934) | |
1-165, gnl|panTro1|chr3_random (43462738-43462448) | |
1-165, gnl|rheMac2|chr5 (3735533-3735243) | |
1-165, gnl|rn3|chr14 (78357113-78357415) | |
207-339, gnl|bosTau2|chr6 (61157526-61157658) | |
207-339, gnl|canFam2|chr3 (73183017-73183214) | |
207-339, gnl|dasNov1|scaffold_8040 (4386-4205) | |
207-339, gnl|hg17|chr4 (5136607-5136806) | |
207-339, gnl|Hg17|chr4 (5136766-5136634) | |
207-339, gnl|loxAfr1|scaffold_21784 (7954-7761) | |
207-339, gnl|mm7|chr5 (36819129-36818941) | |
207-339, gnl|Mm7|chr5 (36818975-36819107) | |
207-339, gnl|monDom2|scaffold_10 (32387934-32388132) | |
207-339, gnl|oryCun1|scaffold_113561 (4784-4968) | |
207-339, gnl|panTro1|chr3_random (43465228-43465029) | |
207-339, gnl|rheMac2|chr5 (3737924-3737725) | |
207-339, gnl|rn3|chr14 (78355081-78355268) | |
343-893, gnl|bosTau2|chr6 (61158892-61159462) | |
343-893, gnl|canFam2|chr3 (73181223-73181808) | |
343-893, gnl|dasNov1|scaffold_8040 (6086-5515) | |
343-893, gnl|echTel1|scaffold_156007 (4166-4709) | |
343-893, gnl|hg17|chr4 (5134462-5135029) | |
343-893, gnl|Hg17|chr4 (5135029-5134461) | |
343-893, gnl|mm7|chr5 (36821148-36820614) | |
343-893, gnl|Mm7|chr5 (36820612-36821145) | |
343-893, gnl|monDom2|scaffold_10 (32385340-32385905) | |
343-893, gnl|oryCun1|scaffold_113561 (3372-3795) | |
343-893, gnl|panTro1|chr3_random (43467378-43466811) | |
343-893, gnl|rheMac2|chr5 (3740071-3739497) | |
343-893, gnl|rn3|chr14 (78353285-78353775) |
Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-165, gnl|bosTau2|chr6 (61154698-61154868) | |
1-165, gnl|canFam2|chr3 (73185375-73185650) | |
1-165, gnl|dasNov1|scaffold_8040 (2375-2059) | |
1-165, gnl|hg17|chr4 (5139087-5139377) | |
1-165, gnl|Hg17|chr4 (5139254-5139091) | |
1-165, gnl|loxAfr1|scaffold_21784 (4543-4280) | |
1-165, gnl|mm7|chr5 (36817112-36816807) | |
1-165, gnl|Mm7|chr5 (36816935-36817106) | |
1-165, gnl|monDom2|scaffold_10 (32394567-32394934) | |
1-165, gnl|panTro1|chr3_random (43462738-43462448) | |
1-165, gnl|rheMac2|chr5 (3735533-3735243) | |
1-165, gnl|rn3|chr14 (78357113-78357415) | |
207-339, gnl|bosTau2|chr6 (61157526-61157658) | |
207-339, gnl|canFam2|chr3 (73183017-73183214) | |
207-339, gnl|dasNov1|scaffold_8040 (4386-4205) | |
207-339, gnl|hg17|chr4 (5136607-5136806) | |
207-339, gnl|Hg17|chr4 (5136766-5136634) | |
207-339, gnl|loxAfr1|scaffold_21784 (7954-7761) | |
207-339, gnl|mm7|chr5 (36819129-36818941) | |
207-339, gnl|Mm7|chr5 (36818975-36819107) | |
207-339, gnl|monDom2|scaffold_10 (32387934-32388132) | |
207-339, gnl|oryCun1|scaffold_113561 (4784-4968) | |
207-339, gnl|panTro1|chr3_random (43465228-43465029) | |
207-339, gnl|rheMac2|chr5 (3737924-3737725) | |
207-339, gnl|rn3|chr14 (78355081-78355268) | |
343-893, gnl|bosTau2|chr6 (61158892-61159462) | |
343-893, gnl|canFam2|chr3 (73181223-73181808) | |
343-893, gnl|dasNov1|scaffold_8040 (6086-5515) | |
343-893, gnl|echTel1|scaffold_156007 (4166-4709) | |
343-893, gnl|hg17|chr4 (5134462-5135029) | |
343-893, gnl|Hg17|chr4 (5135029-5134461) | |
343-893, gnl|mm7|chr5 (36821148-36820614) | |
343-893, gnl|Mm7|chr5 (36820612-36821145) | |
343-893, gnl|monDom2|scaffold_10 (32385340-32385905) | |
343-893, gnl|oryCun1|scaffold_113561 (3372-3795) | |
343-893, gnl|panTro1|chr3_random (43467378-43466811) | |
343-893, gnl|rheMac2|chr5 (3740071-3739497) | |
343-893, gnl|rn3|chr14 (78353285-78353775) |
Expressed library(ies): 6 entry(ies) | More info |
Expressed library(ies): 6 entry(ies) | Help | Less info |
nmm (0.531209) | |
hyp (0.142837) | |
nca (0.136874) | |
ret (0.128733) | |
tra (0.123092) | |
eje (0.0988338) |
Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nmm (0.531209) | |
hyp (0.142837) | |
nca (0.136874) | |
ret (0.128733) | |
tra (0.123092) | |
eje (0.0988338) |