Non-Coding RNA Search

Ss1.1-rnca01b_b8.5

Sequence:


               
               AGGCCGCACGATGCCTGGAGTTACTGTAAAAGATGTGAACCAGCAGGAGTTCGTCAGAGC
TCTGGCAGCCTTTCTCAAAAAGTCCGGGAAGCTGAAAGTCCCTGAATGGGTGGACACTGT
CAAGCTGGCCAAGCATAAAGAACTCGCTCCCTATGATGAGAACTGGTTCTACACACGAGC
TGGGGCCGCAAACTGACACCTCAGGGACAGAGAGATCTGGACAGAATCGCCGGACAGGTG
GCAGCTGCCAACAAGAAGCATTAGAACAAATGAAGCTGGGTTAATAAACTGCCTCGTTCA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCGCACGATGCCTGGAGTTACTGTAAAAGATGTGAACCAGCAGGAGTTCGTCAGAGC
TCTGGCAGCCTTTCTCAAAAAGTCCGGGAAGCTGAAAGTCCCTGAATGGGTGGACACTGT
CAAGCTGGCCAAGCATAAAGAACTCGCTCCCTATGATGAGAACTGGTTCTACACACGAGC
TGGGGCCGCAAACTGACACCTCAGGGACAGAGAGATCTGGACAGAATCGCCGGACAGGTG
GCAGCTGCCAACAAGAAGCATTAGAACAAATGAAGCTGGGTTAATAAACTGCCTCGTTCA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862778|ref|XP_594199.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862778|ref|XP_594199.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-182, gnl|bosTau2|chr11 (84869743-84869924)
               

               
               1-182, gnl|Hg17|chr14 (34108101-34107912)
               

               
               1-182, gnl|Mm7|chr12 (108416364-108416545)
               


               
               211-326, gnl|bosTau2|chr16 (42796969-42796855)
               

               
               211-326, gnl|Hg17|chr14 (34107707-34107602)
               

               
               211-326, gnl|Mm7|chr12 (108416750-108416855)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr11 (84869743-84869924)
               

               
               1-182, gnl|Hg17|chr14 (34108101-34107912)
               

               
               1-182, gnl|Mm7|chr12 (108416364-108416545)
               


               
               211-326, gnl|bosTau2|chr16 (42796969-42796855)
               

               
               211-326, gnl|Hg17|chr14 (34107707-34107602)
               

               
               211-326, gnl|Mm7|chr12 (108416750-108416855)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               elu (0.385356)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-182, gnl\|bosTau2\|chr11 (84869743-84869924)
	1-182, gnl\|Hg17\|chr14 (34108101-34107912)
	1-182, gnl\|Mm7\|chr12 (108416364-108416545)

	211-326, gnl\|bosTau2\|chr16 (42796969-42796855)
	211-326, gnl\|Hg17\|chr14 (34107707-34107602)
	211-326, gnl\|Mm7\|chr12 (108416750-108416855)

	elu (0.385356)
	csp (0.322373)
	cag (0.302389)
	med (0.232504)
	ece (0.229305)
	eje (0.197668)
	fty (0.17584)
	mcp (0.170648)
	nje (0.16592)
	nco (0.161734)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	ese (0.126502)
	ecc (0.115035)
	nbm (0.0993246)