Ss1.1-rnca01b_f6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGCAGGCAGTGCTGGGCGGCGGGCAGGGCCAGGACCAGGCTGGCGGCGCGGCGCCCCA TCCAGTACAGGCTGTAGCCCAGGAGGCCCAGGAAGGTGGCCTTCAGGGCCAGCCGGGCCA CTCTGCCGGAGACGGACGGCGGGGGGACGGTCATGATCTCCTGGATGTTGAGGTCGGTGG TCCAGTTCTTCTCGATGCCAGGGACGTGGCCCATGCCCACGACGCCCACCACCACGGAGG GCACGCACTTCCTGGGCTCCGCGTCAGAGGCGCGCGGCAGCTCCAGGCGGCGGGCCGCCT GCCTCAGCATGTAGGTCAGGTAGACGTCGCGCTCGGACACGATGGTGCGGTGCAGGTCGG GGAACTCGCCGATCATCTCCGCCATCATCTGCTCCAGCAGGTCCTTCTGCTTGCAGCGCT CCACGTCGTCCTTGCTGATGGGGTCCGACAGGAAGCACAGGCCCCAGGCCAGCTTGACCT TCTGCCAGAAGGACAGCGCCGCGATGGCCCTCTTGAAGGTGACGGGGATGGGCCGGTCGC CCAGGTGGAACTTGCAGAAAGGCACCTTGCTGGCCTCCTTGAACGCCTCCCTGAACTCGC CGCCCGGGGCCATGCCCAGCTGCTCCGTGATGTGGGCCGACACCTTCAGCAGCAGCATCT GCATGAGCCCGGACATGACCCCGTTCTGCCTCACGGCCTGCTGCAGCTTCTCCAGGCTGA CCTCCCGGGCCTCCCGCAGCAGCGTGCGCTCGTCCATCTTCAGCATGGACACGCGGTACT GGCACAGCTCCACCACCACCACGTCGGGCTGCACCTCCCGGATGGTCTTCACCACGTCCT TCTTGCTGTCGTCGCTGAAGTGAGCTGTGCCCACCACGTACACCCGGCTGCCATCCTCGG CCACCAGCTCGGTCACCGTGCGTGGCAGGTCGGGCCGCTCTCGCCGCCTCTTCAGCTTCA TCTCCAGCAGCAGGTTGAAAGCATCCACATCGGACAGGCTCTGCGGGTCTCCGCGAAGTG CCCTGGGCACCACCTCCGGAATCCCTGAGGTCACGACGGGCTCCGTGTCAGCCTCGCGAG TGTCAGCCTCGCGAGGTGGTTGCTCTTCCTGCGCCTCCATGGCTGGGCGGCAGCTCCCGG CACCAGAGGGTGAAGCCGAAGCAGGGCGGCGCTCCTCAGCCGGCCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGCAGGCAGTGCTGGGCGGCGGGCAGGGCCAGGACCAGGCTGGCGGCGCGGCGCCCCA TCCAGTACAGGCTGTAGCCCAGGAGGCCCAGGAAGGTGGCCTTCAGGGCCAGCCGGGCCA CTCTGCCGGAGACGGACGGCGGGGGGACGGTCATGATCTCCTGGATGTTGAGGTCGGTGG TCCAGTTCTTCTCGATGCCAGGGACGTGGCCCATGCCCACGACGCCCACCACCACGGAGG GCACGCACTTCCTGGGCTCCGCGTCAGAGGCGCGCGGCAGCTCCAGGCGGCGGGCCGCCT GCCTCAGCATGTAGGTCAGGTAGACGTCGCGCTCGGACACGATGGTGCGGTGCAGGTCGG GGAACTCGCCGATCATCTCCGCCATCATCTGCTCCAGCAGGTCCTTCTGCTTGCAGCGCT CCACGTCGTCCTTGCTGATGGGGTCCGACAGGAAGCACAGGCCCCAGGCCAGCTTGACCT TCTGCCAGAAGGACAGCGCCGCGATGGCCCTCTTGAAGGTGACGGGGATGGGCCGGTCGC CCAGGTGGAACTTGCAGAAAGGCACCTTGCTGGCCTCCTTGAACGCCTCCCTGAACTCGC CGCCCGGGGCCATGCCCAGCTGCTCCGTGATGTGGGCCGACACCTTCAGCAGCAGCATCT GCATGAGCCCGGACATGACCCCGTTCTGCCTCACGGCCTGCTGCAGCTTCTCCAGGCTGA CCTCCCGGGCCTCCCGCAGCAGCGTGCGCTCGTCCATCTTCAGCATGGACACGCGGTACT GGCACAGCTCCACCACCACCACGTCGGGCTGCACCTCCCGGATGGTCTTCACCACGTCCT TCTTGCTGTCGTCGCTGAAGTGAGCTGTGCCCACCACGTACACCCGGCTGCCATCCTCGG CCACCAGCTCGGTCACCGTGCGTGGCAGGTCGGGCCGCTCTCGCCGCCTCTTCAGCTTCA TCTCCAGCAGCAGGTTGAAAGCATCCACATCGGACAGGCTCTGCGGGTCTCCGCGAAGTG CCCTGGGCACCACCTCCGGAATCCCTGAGGTCACGACGGGCTCCGTGTCAGCCTCGCGAG TGTCAGCCTCGCGAGGTGGTTGCTCTTCCTGCGCCTCCATGGCTGGGCGGCAGCTCCCGG CACCAGAGGGTGAAGCCGAAGCAGGGCGGCGCTCCTCAGCCGGCCTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-149, gnl|bosTau2|chr5 (76064724-76064872) | |
| 1-149, gnl|Hg17|chr22 (48939379-48939231) | |
| 1-149, gnl|Mm7|chr15 (89168239-89168091) | |
| 256-442, gnl|bosTau2|chr5 (76065143-76065329) | |
| 256-442, gnl|canFam2|chr10 (20034847-20034651) | |
| 256-442, gnl|danRer3|chr18 (11718111-11718297) | |
| 256-442, gnl|echTel1|scaffold_202382 (11191-11003) | |
| 256-442, gnl|fr1|chrUn (135569335-135569151) | |
| 256-442, gnl|galGal2|chr1 (17548829-17548641) | |
| 256-442, gnl|hg17|chr22 (48938698-48938893) | |
| 256-442, gnl|Hg17|chr22 (48938884-48938701) | |
| 256-442, gnl|loxAfr1|scaffold_63567 (4784-4588) | |
| 256-442, gnl|mm7|chr15 (89167596-89167793) | |
| 256-442, gnl|Mm7|chr15 (89167795-89167601) | |
| 256-442, gnl|monDom2|scaffold_119 (437736-437938) | |
| 256-442, gnl|panTro1|chr23 (49384702-49384897) | |
| 256-442, gnl|rheMac2|chr10 (94202639-94202834) | |
| 256-442, gnl|rn3|chr7 (127423013-127423210) | |
| 256-442, gnl|tetNig1|chr13 (6481406-6481586) | |
| 256-442, gnl|xenTro1|scaffold_668 (599532-599354) | |
| 574-688, gnl|bosTau2|chr5 (76065716-76065830) | |
| 574-688, gnl|canFam2|chr10 (20035427-20035283) | |
| 574-688, gnl|danRer3|chr18 (11715846-11715978) | |
| 574-688, gnl|echTel1|scaffold_202382 (11664-11529) | |
| 574-688, gnl|fr1|chrUn (135570083-135569961) | |
| 574-688, gnl|galGal2|chr1 (17552144-17552009) | |
| 574-688, gnl|hg17|chr22 (48938115-48938253) | |
| 574-688, gnl|Hg17|chr22 (48938238-48938124) | |
| 574-688, gnl|loxAfr1|scaffold_63567 (5402-5267) | |
| 574-688, gnl|mm7|chr15 (89167021-89167159) | |
| 574-688, gnl|Mm7|chr15 (89167144-89167030) | |
| 574-688, gnl|monDom2|scaffold_119 (434520-434654) | |
| 574-688, gnl|panTro1|chr23 (49384065-49384203) | |
| 574-688, gnl|rheMac2|chr10 (94202059-94202197) | |
| 574-688, gnl|rn3|chr7 (127422428-127422566) | |
| 574-688, gnl|tetNig1|chr13 (6480861-6480982) | |
| 574-688, gnl|xenTro1|scaffold_668 (600695-600571) | |
| 803-993, gnl|bosTau2|chr5 (76066456-76066645) | |
| 803-993, gnl|canFam2|chr10 (20036124-20035947) | |
| 803-993, gnl|danRer3|chr18 (11713178-11713369) | |
| 803-993, gnl|dasNov1|scaffold_145817 (565-385) | |
| 803-993, gnl|echTel1|scaffold_243651 (342-487) | |
| 803-993, gnl|fr1|chrUn (135571107-135570934) | |
| 803-993, gnl|galGal2|chr1 (17559150-17558980) | |
| 803-993, gnl|hg17|chr22 (48935225-48935443) | |
| 803-993, gnl|Hg17|chr22 (48935541-48935226) | |
| 803-993, gnl|loxAfr1|scaffold_63567 (8082-7903) | |
| 803-993, gnl|mm7|chr15 (89164285-89164463) | |
| 803-993, gnl|Mm7|chr15 (89164457-89164286) | |
| 803-993, gnl|monDom2|scaffold_119 (419596-419766) | |
| 803-993, gnl|panTro1|chr23 (49381138-49381325) | |
| 803-993, gnl|rheMac2|chr10 (94198545-94198732) | |
| 803-993, gnl|rn3|chr7 (127419942-127420129) | |
| 803-993, gnl|tetNig1|chr13 (6480194-6480367) | |
| 803-993, gnl|xenTro1|scaffold_668 (602765-602595) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-149, gnl|bosTau2|chr5 (76064724-76064872) | |
| 1-149, gnl|Hg17|chr22 (48939379-48939231) | |
| 1-149, gnl|Mm7|chr15 (89168239-89168091) | |
| 256-442, gnl|bosTau2|chr5 (76065143-76065329) | |
| 256-442, gnl|canFam2|chr10 (20034847-20034651) | |
| 256-442, gnl|danRer3|chr18 (11718111-11718297) | |
| 256-442, gnl|echTel1|scaffold_202382 (11191-11003) | |
| 256-442, gnl|fr1|chrUn (135569335-135569151) | |
| 256-442, gnl|galGal2|chr1 (17548829-17548641) | |
| 256-442, gnl|hg17|chr22 (48938698-48938893) | |
| 256-442, gnl|Hg17|chr22 (48938884-48938701) | |
| 256-442, gnl|loxAfr1|scaffold_63567 (4784-4588) | |
| 256-442, gnl|mm7|chr15 (89167596-89167793) | |
| 256-442, gnl|Mm7|chr15 (89167795-89167601) | |
| 256-442, gnl|monDom2|scaffold_119 (437736-437938) | |
| 256-442, gnl|panTro1|chr23 (49384702-49384897) | |
| 256-442, gnl|rheMac2|chr10 (94202639-94202834) | |
| 256-442, gnl|rn3|chr7 (127423013-127423210) | |
| 256-442, gnl|tetNig1|chr13 (6481406-6481586) | |
| 256-442, gnl|xenTro1|scaffold_668 (599532-599354) | |
| 574-688, gnl|bosTau2|chr5 (76065716-76065830) | |
| 574-688, gnl|canFam2|chr10 (20035427-20035283) | |
| 574-688, gnl|danRer3|chr18 (11715846-11715978) | |
| 574-688, gnl|echTel1|scaffold_202382 (11664-11529) | |
| 574-688, gnl|fr1|chrUn (135570083-135569961) | |
| 574-688, gnl|galGal2|chr1 (17552144-17552009) | |
| 574-688, gnl|hg17|chr22 (48938115-48938253) | |
| 574-688, gnl|Hg17|chr22 (48938238-48938124) | |
| 574-688, gnl|loxAfr1|scaffold_63567 (5402-5267) | |
| 574-688, gnl|mm7|chr15 (89167021-89167159) | |
| 574-688, gnl|Mm7|chr15 (89167144-89167030) | |
| 574-688, gnl|monDom2|scaffold_119 (434520-434654) | |
| 574-688, gnl|panTro1|chr23 (49384065-49384203) | |
| 574-688, gnl|rheMac2|chr10 (94202059-94202197) | |
| 574-688, gnl|rn3|chr7 (127422428-127422566) | |
| 574-688, gnl|tetNig1|chr13 (6480861-6480982) | |
| 574-688, gnl|xenTro1|scaffold_668 (600695-600571) | |
| 803-993, gnl|bosTau2|chr5 (76066456-76066645) | |
| 803-993, gnl|canFam2|chr10 (20036124-20035947) | |
| 803-993, gnl|danRer3|chr18 (11713178-11713369) | |
| 803-993, gnl|dasNov1|scaffold_145817 (565-385) | |
| 803-993, gnl|echTel1|scaffold_243651 (342-487) | |
| 803-993, gnl|fr1|chrUn (135571107-135570934) | |
| 803-993, gnl|galGal2|chr1 (17559150-17558980) | |
| 803-993, gnl|hg17|chr22 (48935225-48935443) | |
| 803-993, gnl|Hg17|chr22 (48935541-48935226) | |
| 803-993, gnl|loxAfr1|scaffold_63567 (8082-7903) | |
| 803-993, gnl|mm7|chr15 (89164285-89164463) | |
| 803-993, gnl|Mm7|chr15 (89164457-89164286) | |
| 803-993, gnl|monDom2|scaffold_119 (419596-419766) | |
| 803-993, gnl|panTro1|chr23 (49381138-49381325) | |
| 803-993, gnl|rheMac2|chr10 (94198545-94198732) | |
| 803-993, gnl|rn3|chr7 (127419942-127420129) | |
| 803-993, gnl|tetNig1|chr13 (6480194-6480367) | |
| 803-993, gnl|xenTro1|scaffold_668 (602765-602595) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eje (0.197668) | |
| nca (0.136874) | |
| ese (0.126502) | |
| clu (0.119646) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.197668) | |
| nca (0.136874) | |
| ese (0.126502) | |
| clu (0.119646) |