Ss1.1-rnca01b_h2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGCAGTACCGGAAGCTGCTCAAATCCACACTGGTGCTCATGCCGCTCTTTGGCGTCC ATTACATCGTCTTCATGGCTACGCCATACACTGAGGTCTCAGGGACGCTCTGGCAAGTCC AGATGCACTACGAGATGCTCTTCAACTCCTTCCAGGGATTTTTTGTTGCCATCATATACT GTTTCTGCAACGGCGAGGTACAGGCTGAAATCAAGAAATCCTGGAGCCGCTGGACATTGG CACTGGACTTTAAGCGCAAGGCACGTAGTGGGAGCAGCAGCTACAGCTATGGTCCGATGG TGTCTCACACGAGTGTGACCAATGTGGGGCCCCGCACGGGACTTGGCCTGCCCCTCAGCC CCCGCCTGCTGCCTGCCGCCACCACCAATGGCCACCCCCAGCTGCCCTGCCACACCAAGC CAGAGACCCCAGCTCTCCAGACCACACCCCCTGTCGTGGCCGCTCCTAAGGACGATGGGT TCCTCAACGGCTCCTGCTCAGGGTTGGATGAGGAGGCCTCTGCACCAGAGAGGCCATCTG TTCTGCTGCAGGAGGAGTGGGAGACAGTCATGTGATCGGGGACCCAAGGGTTGGACCTGT GGACATAAGGGTGGACAGGCTGACCAAGAGACACGTGGTTGGACAGTTGCCTACTTAGGG CTGGGAGCTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGCAGTACCGGAAGCTGCTCAAATCCACACTGGTGCTCATGCCGCTCTTTGGCGTCC ATTACATCGTCTTCATGGCTACGCCATACACTGAGGTCTCAGGGACGCTCTGGCAAGTCC AGATGCACTACGAGATGCTCTTCAACTCCTTCCAGGGATTTTTTGTTGCCATCATATACT GTTTCTGCAACGGCGAGGTACAGGCTGAAATCAAGAAATCCTGGAGCCGCTGGACATTGG CACTGGACTTTAAGCGCAAGGCACGTAGTGGGAGCAGCAGCTACAGCTATGGTCCGATGG TGTCTCACACGAGTGTGACCAATGTGGGGCCCCGCACGGGACTTGGCCTGCCCCTCAGCC CCCGCCTGCTGCCTGCCGCCACCACCAATGGCCACCCCCAGCTGCCCTGCCACACCAAGC CAGAGACCCCAGCTCTCCAGACCACACCCCCTGTCGTGGCCGCTCCTAAGGACGATGGGT TCCTCAACGGCTCCTGCTCAGGGTTGGATGAGGAGGCCTCTGCACCAGAGAGGCCATCTG TTCTGCTGCAGGAGGAGTGGGAGACAGTCATGTGATCGGGGACCCAAGGGTTGGACCTGT GGACATAAGGGTGGACAGGCTGACCAAGAGACACGTGGTTGGACAGTTGCCTACTTAGGG CTGGGAGCTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 550-665, + strand, RNAz p=0.914759 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 550-665, + strand, RNAz p=0.914759 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_000316, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 13-156, gnl|bosTau2|chr22 (40987067-40987210) | |
| 13-156, gnl|canFam2|chr20 (44905619-44905469) | |
| 13-156, gnl|danRer3|chr17 (48080781-48080636) | |
| 13-156, gnl|dasNov1|scaffold_196043 (1008-1160) | |
| 13-156, gnl|echTel1|scaffold_115810 (474-318) | |
| 13-156, gnl|fr1|chrUn (136972204-136972054) | |
| 13-156, gnl|galGal2|chr27 (1279174-1279024) | |
| 13-156, gnl|hg17|chr3 (46919018-46919174) | |
| 13-156, gnl|Hg17|chr3 (46919019-46919162) | |
| 13-156, gnl|loxAfr1|scaffold_126512 (632-476) | |
| 13-156, gnl|mm7|chr9 (110421557-110421407) | |
| 13-156, gnl|Mm7|chr9 (110421554-110421411) | |
| 13-156, gnl|monDom2|scaffold_5 (81072392-81072548) | |
| 13-156, gnl|oryCun1|scaffold_206213 (54078-54228) | |
| 13-156, gnl|panTro1|chr2_random (37757736-37757580) | |
| 13-156, gnl|rheMac2|chr2 (89637211-89637055) | |
| 13-156, gnl|rn3|chr8 (115120509-115120359) | |
| 13-156, gnl|tetNig1|chr15_random (1195107-1194961) | |
| 13-156, gnl|xenTro1|scaffold_221 (1542013-1542163) | |
| 196-665, gnl|bosTau2|chr22 (40987981-40988450) | |
| 196-665, gnl|Hg17|chr3 (46919762-46920241) | |
| 196-665, gnl|Mm7|chr9 (110420338-110419865) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-156, gnl|bosTau2|chr22 (40987067-40987210) | |
| 13-156, gnl|canFam2|chr20 (44905619-44905469) | |
| 13-156, gnl|danRer3|chr17 (48080781-48080636) | |
| 13-156, gnl|dasNov1|scaffold_196043 (1008-1160) | |
| 13-156, gnl|echTel1|scaffold_115810 (474-318) | |
| 13-156, gnl|fr1|chrUn (136972204-136972054) | |
| 13-156, gnl|galGal2|chr27 (1279174-1279024) | |
| 13-156, gnl|hg17|chr3 (46919018-46919174) | |
| 13-156, gnl|Hg17|chr3 (46919019-46919162) | |
| 13-156, gnl|loxAfr1|scaffold_126512 (632-476) | |
| 13-156, gnl|mm7|chr9 (110421557-110421407) | |
| 13-156, gnl|Mm7|chr9 (110421554-110421411) | |
| 13-156, gnl|monDom2|scaffold_5 (81072392-81072548) | |
| 13-156, gnl|oryCun1|scaffold_206213 (54078-54228) | |
| 13-156, gnl|panTro1|chr2_random (37757736-37757580) | |
| 13-156, gnl|rheMac2|chr2 (89637211-89637055) | |
| 13-156, gnl|rn3|chr8 (115120509-115120359) | |
| 13-156, gnl|tetNig1|chr15_random (1195107-1194961) | |
| 13-156, gnl|xenTro1|scaffold_221 (1542013-1542163) | |
| 196-665, gnl|bosTau2|chr22 (40987981-40988450) | |
| 196-665, gnl|Hg17|chr3 (46919762-46920241) | |
| 196-665, gnl|Mm7|chr9 (110420338-110419865) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nbm (0.198649) | |
| mga (0.160205) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nbm (0.198649) | |
| mga (0.160205) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) |