Non-Coding RNA Search

Ss1.1-rnca01b_i9.5

Sequence:


               
               CGGCGAGCGTACGGGGATGAGCGCGTCCCTGGGCCGGGCGGCGGCGGCTCTGCTCCGCTG
GGGGCGCGGCGTAGGCGGTGGTCTGTGGGTCCCGGGCGTGCGGGCGGCGAGCTCGGGCGG
GAGCGGCTCAGCGGAGCATCTGGACACGCTGGTGAAGAAGGACAAGGTGGTGGTCTTCCT
CAAGGGGACGCCAGAGCAGCCCCAGTGTGGCTTCAGCAACGCCGTGGTGCAGATCCTGCG
GCTGCACGGCGTCCGCGACTACGCGGCCTACAACGTGCTGGACGACCCCCAGCTCCGGCA
AGGCATTAAAGACTATTCCAACTGGCCCACCATCCCGCAAGTGTACCTCAACGGCGAGTT
CGTGGGGGGCTGTGACATTCTTCTGCAGATGCACCAGAACGGGGACCTGGTGGAAGAGCT
GAAAAAGCTGGGGATCCGCTCCGCCCTTTTAGATGAAAAGACAGACCAAGACTCGAAGTG
AGGGTGGCCCCGGGCGAGGGAGCCCCTGGGGTCAGAGACTCACTGCCAGAAAAGCCTTAC
TGATTTGGGTGTCCCTCTTCAGACAGCTGCTTTGCACTGATTCTTCCAGTTTGTAAGCAG
CCCAGTGATTTTAGGGTGTCTGGGGTTTGGGGCAAAGAAAAACTTCTTGTGAACGTAATT
GTAACCACTGCACTGTAATTAATCACCACTGCGGTGTTAGGAGATTGCTGTAGACACAAT
TCCTTCTTGTGTTGTCCTGTGTCCTGTGCCTGATTCCGAATCATTGTTACCATTCACGAG
TCTTCTGCAGATGTGTCAGTCCACAGAGATAATAGAGCCCTCTCCTCTGATTTTTTGTAA
CTTGTTCTGTAAGAAAATGATGGACAAGGAAGAACATATGATAACCCGGCTGTTGTTTTT
TAAATAAACCAATCCAGGGATACCAAAAAAAAAAAAGGGCTGTTGTTTTTTAAATAAACC
AATCCAGGGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGAGCGTACGGGGATGAGCGCGTCCCTGGGCCGGGCGGCGGCGGCTCTGCTCCGCTG
GGGGCGCGGCGTAGGCGGTGGTCTGTGGGTCCCGGGCGTGCGGGCGGCGAGCTCGGGCGG
GAGCGGCTCAGCGGAGCATCTGGACACGCTGGTGAAGAAGGACAAGGTGGTGGTCTTCCT
CAAGGGGACGCCAGAGCAGCCCCAGTGTGGCTTCAGCAACGCCGTGGTGCAGATCCTGCG
GCTGCACGGCGTCCGCGACTACGCGGCCTACAACGTGCTGGACGACCCCCAGCTCCGGCA
AGGCATTAAAGACTATTCCAACTGGCCCACCATCCCGCAAGTGTACCTCAACGGCGAGTT
CGTGGGGGGCTGTGACATTCTTCTGCAGATGCACCAGAACGGGGACCTGGTGGAAGAGCT
GAAAAAGCTGGGGATCCGCTCCGCCCTTTTAGATGAAAAGACAGACCAAGACTCGAAGTG
AGGGTGGCCCCGGGCGAGGGAGCCCCTGGGGTCAGAGACTCACTGCCAGAAAAGCCTTAC
TGATTTGGGTGTCCCTCTTCAGACAGCTGCTTTGCACTGATTCTTCCAGTTTGTAAGCAG
CCCAGTGATTTTAGGGTGTCTGGGGTTTGGGGCAAAGAAAAACTTCTTGTGAACGTAATT
GTAACCACTGCACTGTAATTAATCACCACTGCGGTGTTAGGAGATTGCTGTAGACACAAT
TCCTTCTTGTGTTGTCCTGTGTCCTGTGCCTGATTCCGAATCATTGTTACCATTCACGAG
TCTTCTGCAGATGTGTCAGTCCACAGAGATAATAGAGCCCTCTCCTCTGATTTTTTGTAA
CTTGTTCTGTAAGAAAATGATGGACAAGGAAGAACATATGATAACCCGGCTGTTGTTTTT
TAAATAAACCAATCCAGGGATACCAAAAAAAAAAAAGGGCTGTTGTTTTTTAAATAAACC
AATCCAGGGATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CN087_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CN087_HUMAN

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               2-236, gnl|bosTau2|chr2 (5860001-5860229)
               

               
               2-236, gnl|Mm7|chr12 (102527007-102527238)
               


               
               301-756, gnl|bosTau2|chr21 (41720664-41721116)
               

               
               301-756, gnl|Hg17|chr14 (95080035-95080500)
               

               
               301-756, gnl|Mm7|chr12 (102534595-102535033)
               


               
               758-907, gnl|bosTau2|chr25 (24673205-24673056)
               

               
               758-907, gnl|Hg17|chrX (119649437-119649578)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-236, gnl|bosTau2|chr2 (5860001-5860229)
               

               
               2-236, gnl|Mm7|chr12 (102527007-102527238)
               


               
               301-756, gnl|bosTau2|chr21 (41720664-41721116)
               

               
               301-756, gnl|Hg17|chr14 (95080035-95080500)
               

               
               301-756, gnl|Mm7|chr12 (102534595-102535033)
               


               
               758-907, gnl|bosTau2|chr25 (24673205-24673056)
               

               
               758-907, gnl|Hg17|chrX (119649437-119649578)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               pla (0.534688)
               

               
               che (0.408942)
               

               
               nbm (0.297974)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               che (0.408942)
               

               
               nbm (0.297974)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	2-236, gnl\|bosTau2\|chr2 (5860001-5860229)
	2-236, gnl\|Mm7\|chr12 (102527007-102527238)

	301-756, gnl\|bosTau2\|chr21 (41720664-41721116)
	301-756, gnl\|Hg17\|chr14 (95080035-95080500)
	301-756, gnl\|Mm7\|chr12 (102534595-102535033)

	758-907, gnl\|bosTau2\|chr25 (24673205-24673056)
	758-907, gnl\|Hg17\|chrX (119649437-119649578)

	pla (0.534688)
	che (0.408942)
	nbm (0.297974)
	nca (0.273748)
	fce (0.271592)
	nms (0.213858)
	hea (0.204499)
	fcc (0.197785)
	col (0.195008)
	lnt (0.142308)
	ssp (0.13552)
	ste (0.135208)
	cov (0.132153)
	sug (0.127291)
	eru (0.120048)
	ebs (0.118301)
	jej (0.0989218)