Non-Coding RNA Search

Ss1.1-rnca01b_k14.5S

Sequence:


               
               AGATCCGACTCCCTGTCCAGCCGTCCTGGTATGTACAGTCCTTCCTGTTTAGCTTATGCC
AGGAAGTTAATCGGGTTGGAGGCCATGCCTTGCCAAAGGTGACGCTGCAGGAGATGCTGA
AAAGCTGTATGGTTCGAGTAGTGGCCGCCTATGAGAAACTTGCAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCCGACTCCCTGTCCAGCCGTCCTGGTATGTACAGTCCTTCCTGTTTAGCTTATGCC
AGGAAGTTAATCGGGTTGGAGGCCATGCCTTGCCAAAGGTGACGCTGCAGGAGATGCTGA
AAAGCTGTATGGTTCGAGTAGTGGCCGCCTATGAGAAACTTGCAGAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               16-134, + strand, RNAz p=0.894039

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               16-134, + strand, RNAz p=0.894039

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               16-168, gnl|bosTau2|chr19 (52663461-52663309)
               

               
               16-168, gnl|canFam2|chr9 (9970475-9970274)
               

               
               16-168, gnl|danRer3|chrNA (215164434-215164639)
               

               
               16-168, gnl|dasNov1|scaffold_914 (80022-79822)
               

               
               16-168, gnl|echTel1|scaffold_212579 (12194-12399)
               

               
               16-168, gnl|fr1|chrUn (247485168-247485366)
               

               
               16-168, gnl|galGal2|chr18 (8767194-8767383)
               

               
               16-168, gnl|hg17|chr17 (68711345-68711546)
               

               
               16-168, gnl|Hg17|chr17 (68711361-68711513)
               

               
               16-168, gnl|mm7|chr11 (113766402-113766595)
               

               
               16-168, gnl|Mm7|chr11 (113766415-113766567)
               

               
               16-168, gnl|monDom2|scaffold_18 (29386528-29386730)
               

               
               16-168, gnl|oryCun1|scaffold_205543 (43265-43068)
               

               
               16-168, gnl|panTro1|chr19 (72085421-72085622)
               

               
               16-168, gnl|rheMac2|chr16 (68460492-68460693)
               

               
               16-168, gnl|rn3|chr10 (103302773-103302966)
               

               
               16-168, gnl|tetNig1|chrUn_random (120434706-120434891)
               

               
               16-168, gnl|xenTro1|scaffold_147 (1855538-1855732)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-168, gnl|bosTau2|chr19 (52663461-52663309)
               

               
               16-168, gnl|canFam2|chr9 (9970475-9970274)
               

               
               16-168, gnl|danRer3|chrNA (215164434-215164639)
               

               
               16-168, gnl|dasNov1|scaffold_914 (80022-79822)
               

               
               16-168, gnl|echTel1|scaffold_212579 (12194-12399)
               

               
               16-168, gnl|fr1|chrUn (247485168-247485366)
               

               
               16-168, gnl|galGal2|chr18 (8767194-8767383)
               

               
               16-168, gnl|hg17|chr17 (68711345-68711546)
               

               
               16-168, gnl|Hg17|chr17 (68711361-68711513)
               

               
               16-168, gnl|mm7|chr11 (113766402-113766595)
               

               
               16-168, gnl|Mm7|chr11 (113766415-113766567)
               

               
               16-168, gnl|monDom2|scaffold_18 (29386528-29386730)
               

               
               16-168, gnl|oryCun1|scaffold_205543 (43265-43068)
               

               
               16-168, gnl|panTro1|chr19 (72085421-72085622)
               

               
               16-168, gnl|rheMac2|chr16 (68460492-68460693)
               

               
               16-168, gnl|rn3|chr10 (103302773-103302966)
               

               
               16-168, gnl|tetNig1|chrUn_random (120434706-120434891)
               

               
               16-168, gnl|xenTro1|scaffold_147 (1855538-1855732)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	16-168, gnl\|bosTau2\|chr19 (52663461-52663309)
	16-168, gnl\|canFam2\|chr9 (9970475-9970274)
	16-168, gnl\|danRer3\|chrNA (215164434-215164639)
	16-168, gnl\|dasNov1\|scaffold_914 (80022-79822)
	16-168, gnl\|echTel1\|scaffold_212579 (12194-12399)
	16-168, gnl\|fr1\|chrUn (247485168-247485366)
	16-168, gnl\|galGal2\|chr18 (8767194-8767383)
	16-168, gnl\|hg17\|chr17 (68711345-68711546)
	16-168, gnl\|Hg17\|chr17 (68711361-68711513)
	16-168, gnl\|mm7\|chr11 (113766402-113766595)
	16-168, gnl\|Mm7\|chr11 (113766415-113766567)
	16-168, gnl\|monDom2\|scaffold_18 (29386528-29386730)
	16-168, gnl\|oryCun1\|scaffold_205543 (43265-43068)
	16-168, gnl\|panTro1\|chr19 (72085421-72085622)
	16-168, gnl\|rheMac2\|chr16 (68460492-68460693)
	16-168, gnl\|rn3\|chr10 (103302773-103302966)
	16-168, gnl\|tetNig1\|chrUn_random (120434706-120434891)
	16-168, gnl\|xenTro1\|scaffold_147 (1855538-1855732)