Non-Coding RNA Search

Ss1.1-rnca02b_n12.5

Sequence:


               
               CTATAAGGTCAGACCCAAAAAGATGGTAAGAAAAAGGCTCGACTTTGGCAACACCTTTAG
TTTCCCAAATCAAAACAGCCAGGATCTCTTTAATTACAGTTACAGTACTAAATGTCTTTA
GTGAAATAATCAGCATTTTTCAAATGGTGTATTGCCGTAATGTCAAAGTTCTGTCTTGAT
TTTGGAGAGGCTGGGAAGTAAGGTCAGTCAAACACTCTGACCTCAGAGTGGAATTTAGTA
CATGTCAAGAGAGGGAAGTTGTGTGAAGAGGCAGCCAAAGCAAACAGCTTGACTGCGTCT
GGGATCTTCTTGCATTAGTGCTGCTGCAGAGCCCATTTACACACATCAAGAGCCGAGGAA
TCTGCACTGCTGGGATTGGAGGGGACAGGTGTTCTTGGATAAGGGTCCCGGCGTCACAAG
TTAATAACGTTGCTTGGTTTAGGATATGCTGAGTTCTGAGATTAGGCAGAGACCTGACAG
ATCTGAGCAGGATTTGGAGACATGCACCTTTTGGGAAAGGCTCTATCCCCAGCCACCCTC
CCCTGGTCTAATCGCAGCCCTCAGTAGTTTGGGAAGCGGGTAAAGAGAACAGGGTTGACA
AGGATCTGGTGAACCTTGGGAACCTTGATCTCCTCCTGCCTCTGCCTCCAGCACCCCCAT
GTGAATCATTTCCCCTCTCATTGCACACAGAGATCATTAATTCTGGCACGTGGGTAGTCA
GTAGCAGAGTACTTTCTGTAGCCACTGCTCTACTGCTTTGTGAATTTCACCCACAGACGT
GGTTAGTCACAATCTTGAAGGCTTTTTCTTTTCTTTTTTTTTTTGCCTTTTGCCTTTGTT
TTTAATCTTCTGTCTTTATTTCTTCCATCTTGAAGGTGCACTTAGTGACAAAGGACAGGG
GACAGGAGGCTGACCAAGGAAACACTCAAGTTTTCTGCTTGCTGTTTGGCCTCTGCCCTC
ACTGCCCAACCCCCTACTGTTGTCCCCAGTCTGGATTTGCAGGGAGAGGAGGGTCATACA
ATAGGTCAGTGATCTCAATAGCGTGTTAGCCAAGAGATTCACCACCCTACCCTTGGGGGA
CAGAAGAGAAATCTACAAAGGGACAGACATGCCATCTTTATTCTAAAAGAAAAAGCTCCC
TTTAGAATTTCTATTGTGGTGCAGTGGTAACGAACCCCACTAGTATTCATGAGGACTGGG
GTTCAATCCCTGGTCTCGCTTAGTGGGTTAAGGATTCTGCACTGCCGTGAGCTATGGTGT
AGGTCGCAGATGCAACTTGGATCTGGCATTGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATAAGGTCAGACCCAAAAAGATGGTAAGAAAAAGGCTCGACTTTGGCAACACCTTTAG
TTTCCCAAATCAAAACAGCCAGGATCTCTTTAATTACAGTTACAGTACTAAATGTCTTTA
GTGAAATAATCAGCATTTTTCAAATGGTGTATTGCCGTAATGTCAAAGTTCTGTCTTGAT
TTTGGAGAGGCTGGGAAGTAAGGTCAGTCAAACACTCTGACCTCAGAGTGGAATTTAGTA
CATGTCAAGAGAGGGAAGTTGTGTGAAGAGGCAGCCAAAGCAAACAGCTTGACTGCGTCT
GGGATCTTCTTGCATTAGTGCTGCTGCAGAGCCCATTTACACACATCAAGAGCCGAGGAA
TCTGCACTGCTGGGATTGGAGGGGACAGGTGTTCTTGGATAAGGGTCCCGGCGTCACAAG
TTAATAACGTTGCTTGGTTTAGGATATGCTGAGTTCTGAGATTAGGCAGAGACCTGACAG
ATCTGAGCAGGATTTGGAGACATGCACCTTTTGGGAAAGGCTCTATCCCCAGCCACCCTC
CCCTGGTCTAATCGCAGCCCTCAGTAGTTTGGGAAGCGGGTAAAGAGAACAGGGTTGACA
AGGATCTGGTGAACCTTGGGAACCTTGATCTCCTCCTGCCTCTGCCTCCAGCACCCCCAT
GTGAATCATTTCCCCTCTCATTGCACACAGAGATCATTAATTCTGGCACGTGGGTAGTCA
GTAGCAGAGTACTTTCTGTAGCCACTGCTCTACTGCTTTGTGAATTTCACCCACAGACGT
GGTTAGTCACAATCTTGAAGGCTTTTTCTTTTCTTTTTTTTTTTGCCTTTTGCCTTTGTT
TTTAATCTTCTGTCTTTATTTCTTCCATCTTGAAGGTGCACTTAGTGACAAAGGACAGGG
GACAGGAGGCTGACCAAGGAAACACTCAAGTTTTCTGCTTGCTGTTTGGCCTCTGCCCTC
ACTGCCCAACCCCCTACTGTTGTCCCCAGTCTGGATTTGCAGGGAGAGGAGGGTCATACA
ATAGGTCAGTGATCTCAATAGCGTGTTAGCCAAGAGATTCACCACCCTACCCTTGGGGGA
CAGAAGAGAAATCTACAAAGGGACAGACATGCCATCTTTATTCTAAAAGAAAAAGCTCCC
TTTAGAATTTCTATTGTGGTGCAGTGGTAACGAACCCCACTAGTATTCATGAGGACTGGG
GTTCAATCCCTGGTCTCGCTTAGTGGGTTAAGGATTCTGCACTGCCGTGAGCTATGGTGT
AGGTCGCAGATGCAACTTGGATCTGGCATTGCTGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               448-564, - strand, RNAz p=0.891994

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-564, - strand, RNAz p=0.891994

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-301, gnl|bosTau2|chr11 (10031991-10031683)
               

               
               3-301, gnl|canFam2|chr17 (54528886-54528371)
               

               
               3-301, gnl|dasNov1|scaffold_7238 (45307-44811)
               

               
               3-301, gnl|hg17|chr2 (71224618-71225131)
               

               
               3-301, gnl|loxAfr1|scaffold_23123 (4414-5035)
               

               
               3-301, gnl|mm7|chr6 (83831021-83831455)
               

               
               3-301, gnl|Mm7|chr6 (83831665-83831274)
               

               
               3-301, gnl|oryCun1|scaffold_211293 (6737-6264)
               

               
               3-301, gnl|panTro1|chr12 (73540597-73541110)
               

               
               3-301, gnl|rheMac2|chr13 (71339500-71340012)
               

               
               3-301, gnl|rn3|chr4 (118244668-118245073)
               


               
               311-820, gnl|bosTau2|chr11 (10031698-10031186)
               

               
               311-820, gnl|Hg17|chr2 (71323853-71323329)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-301, gnl|bosTau2|chr11 (10031991-10031683)
               

               
               3-301, gnl|canFam2|chr17 (54528886-54528371)
               

               
               3-301, gnl|dasNov1|scaffold_7238 (45307-44811)
               

               
               3-301, gnl|hg17|chr2 (71224618-71225131)
               

               
               3-301, gnl|loxAfr1|scaffold_23123 (4414-5035)
               

               
               3-301, gnl|mm7|chr6 (83831021-83831455)
               

               
               3-301, gnl|Mm7|chr6 (83831665-83831274)
               

               
               3-301, gnl|oryCun1|scaffold_211293 (6737-6264)
               

               
               3-301, gnl|panTro1|chr12 (73540597-73541110)
               

               
               3-301, gnl|rheMac2|chr13 (71339500-71340012)
               

               
               3-301, gnl|rn3|chr4 (118244668-118245073)
               


               
               311-820, gnl|bosTau2|chr11 (10031698-10031186)
               

               
               311-820, gnl|Hg17|chr2 (71323853-71323329)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               jca (0.22792)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

	3-301, gnl\|bosTau2\|chr11 (10031991-10031683)
	3-301, gnl\|canFam2\|chr17 (54528886-54528371)
	3-301, gnl\|dasNov1\|scaffold_7238 (45307-44811)
	3-301, gnl\|hg17\|chr2 (71224618-71225131)
	3-301, gnl\|loxAfr1\|scaffold_23123 (4414-5035)
	3-301, gnl\|mm7\|chr6 (83831021-83831455)
	3-301, gnl\|Mm7\|chr6 (83831665-83831274)
	3-301, gnl\|oryCun1\|scaffold_211293 (6737-6264)
	3-301, gnl\|panTro1\|chr12 (73540597-73541110)
	3-301, gnl\|rheMac2\|chr13 (71339500-71340012)
	3-301, gnl\|rn3\|chr4 (118244668-118245073)

	311-820, gnl\|bosTau2\|chr11 (10031698-10031186)
	311-820, gnl\|Hg17\|chr2 (71323853-71323329)

	jca (0.22792)
	nca (0.136874)
	nmm (0.132802)
	eep (0.122564)
	cbl (0.114797)