Ss1.1-rnca03b_i15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAAGAGCACACCTTCCCCTAGAAATCAACTTCAGAGGATGCATGAAGGGTTTCCAGTTC CAAAAGAAAGATTTCAATTTACTGGAGCAGACAGAAACCCTAGGAATTGGTTATGGTTGC CCAGAAGACTCTCTTATATCTCGCAGAGCATATTTCAATGGACAGAGTTTCATTGCTTCA GTTCAGAAAATATCTTTCTTTGATGGCTTTGAAGGAGGTTTTAATTTCCGAACATTACAG CCAAATGGGTTACTCTTCTATTATGCTTCAGGGTCAGACGTGTTCTCCATCTCATTGGAT AATGGCACCGTGACCATGGATGTAAAGGGAATCAAGGTGCAGTCAGCAGATAAACAGTAC AATGACGGGCTGTCCCATTTCATCATTACCTCTGTCTCCCCTGCAAGGTATGAGCTGATA GTAGATAAGAGCAGACTTGGGAGTAAGAACCCTACCAAAGGGAAAGTGGAACAGACACAA GCAGGTGAAAAGAAGTTCTACTTTGGTGGCTCACCCATCAGTCCCCAGTATGCTAATTTC ACCGGCTGTATAAGTAATGCCTACTTCACCAGGTTGGACAGAGATGTAGAGGTCGAAGAT TTCCAGCGGTATGCTGAAAAGGTCCATACTTCTCTTTACGAGTGTCCCATTGAGACTTCC CCATTGTTTCTCCTTCATAAAAAAGGAAAAAACTCCTCAAAGCCTAAAACAAGTCAGAAT AAAAAGGGAGAGAAAAGTAAAGATGCTCCTTCATGGGATCCTGCTGGCCTGAAATTCCTA GAGAGAAATGTTCCAAGAGACTCTCATTGCCACCTTTCCAACAGCCCCAGAGCCATAGCG CATGCCTATCAGTATGGCGGGACAGCCAACAGCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAAGAGCACACCTTCCCCTAGAAATCAACTTCAGAGGATGCATGAAGGGTTTCCAGTTC CAAAAGAAAGATTTCAATTTACTGGAGCAGACAGAAACCCTAGGAATTGGTTATGGTTGC CCAGAAGACTCTCTTATATCTCGCAGAGCATATTTCAATGGACAGAGTTTCATTGCTTCA GTTCAGAAAATATCTTTCTTTGATGGCTTTGAAGGAGGTTTTAATTTCCGAACATTACAG CCAAATGGGTTACTCTTCTATTATGCTTCAGGGTCAGACGTGTTCTCCATCTCATTGGAT AATGGCACCGTGACCATGGATGTAAAGGGAATCAAGGTGCAGTCAGCAGATAAACAGTAC AATGACGGGCTGTCCCATTTCATCATTACCTCTGTCTCCCCTGCAAGGTATGAGCTGATA GTAGATAAGAGCAGACTTGGGAGTAAGAACCCTACCAAAGGGAAAGTGGAACAGACACAA GCAGGTGAAAAGAAGTTCTACTTTGGTGGCTCACCCATCAGTCCCCAGTATGCTAATTTC ACCGGCTGTATAAGTAATGCCTACTTCACCAGGTTGGACAGAGATGTAGAGGTCGAAGAT TTCCAGCGGTATGCTGAAAAGGTCCATACTTCTCTTTACGAGTGTCCCATTGAGACTTCC CCATTGTTTCTCCTTCATAAAAAAGGAAAAAACTCCTCAAAGCCTAAAACAAGTCAGAAT AAAAAGGGAGAGAAAAGTAAAGATGCTCCTTCATGGGATCCTGCTGGCCTGAAATTCCTA GAGAGAAATGTTCCAAGAGACTCTCATTGCCACCTTTCCAACAGCCCCAGAGCCATAGCG CATGCCTATCAGTATGGCGGGACAGCCAACAGCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 758-875, - strand, RNAz p=0.921173 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 758-875, - strand, RNAz p=0.921173 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 136-273, gnl|bosTau2|chr9 (19374793-19374930) | |
| 136-273, gnl|canFam2|chr12 (71595110-71595256) | |
| 136-273, gnl|danRer3|chr20 (570293-570440) | |
| 136-273, gnl|dasNov1|scaffold_1035 (6371-6517) | |
| 136-273, gnl|echTel1|scaffold_157833 (1139-993) | |
| 136-273, gnl|fr1|chrUn (221421988-221421842) | |
| 136-273, gnl|galGal2|chr3 (64195828-64195682) | |
| 136-273, gnl|hg17|chr6 (112560643-112560789) | |
| 136-273, gnl|Hg17|chr6 (112560785-112560648) | |
| 136-273, gnl|loxAfr1|scaffold_2282 (6879-7025) | |
| 136-273, gnl|mm7|chr10 (38863212-38863066) | |
| 136-273, gnl|Mm7|chr10 (38863068-38863205) | |
| 136-273, gnl|monDom2|scaffold_0 (107333960-107333814) | |
| 136-273, gnl|panTro1|chr5 (114908800-114908932) | |
| 136-273, gnl|rheMac2|chr4 (151811150-151811004) | |
| 136-273, gnl|rn3|chr20 (43258743-43258597) | |
| 136-273, gnl|tetNig1|chrUn_random (114298839-114298693) | |
| 136-273, gnl|xenTro1|scaffold_174 (1095253-1095399) | |
| 570-702, gnl|bosTau2|chr13 (15809202-15809334) | |
| 570-702, gnl|Mm7|chr10 (38868555-38868687) | |
| 725-875, gnl|bosTau2|chr9 (19384524-19384674) | |
| 725-875, gnl|canFam2|chr12 (71585983-71586223) | |
| 725-875, gnl|dasNov1|scaffold_28423 (2269-2516) | |
| 725-875, gnl|echTel1|scaffold_95815 (4318-4561) | |
| 725-875, gnl|hg17|chr6 (112549879-112550112) | |
| 725-875, gnl|Hg17|chr6 (112550099-112549949) | |
| 725-875, gnl|loxAfr1|scaffold_11879 (94434-94681) | |
| 725-875, gnl|mm7|chr10 (38872149-38871913) | |
| 725-875, gnl|Mm7|chr10 (38871927-38872077) | |
| 725-875, gnl|monDom2|scaffold_0 (107342936-107342694) | |
| 725-875, gnl|oryCun1|scaffold_201691 (6143-5903) | |
| 725-875, gnl|panTro1|chr5 (114896974-114897207) | |
| 725-875, gnl|rheMac2|chr4 (151822197-151821964) | |
| 725-875, gnl|rn3|chr20 (43266776-43266541) | |
| 725-875, gnl|xenTro1|scaffold_174 (1091573-1091813) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 136-273, gnl|bosTau2|chr9 (19374793-19374930) | |
| 136-273, gnl|canFam2|chr12 (71595110-71595256) | |
| 136-273, gnl|danRer3|chr20 (570293-570440) | |
| 136-273, gnl|dasNov1|scaffold_1035 (6371-6517) | |
| 136-273, gnl|echTel1|scaffold_157833 (1139-993) | |
| 136-273, gnl|fr1|chrUn (221421988-221421842) | |
| 136-273, gnl|galGal2|chr3 (64195828-64195682) | |
| 136-273, gnl|hg17|chr6 (112560643-112560789) | |
| 136-273, gnl|Hg17|chr6 (112560785-112560648) | |
| 136-273, gnl|loxAfr1|scaffold_2282 (6879-7025) | |
| 136-273, gnl|mm7|chr10 (38863212-38863066) | |
| 136-273, gnl|Mm7|chr10 (38863068-38863205) | |
| 136-273, gnl|monDom2|scaffold_0 (107333960-107333814) | |
| 136-273, gnl|panTro1|chr5 (114908800-114908932) | |
| 136-273, gnl|rheMac2|chr4 (151811150-151811004) | |
| 136-273, gnl|rn3|chr20 (43258743-43258597) | |
| 136-273, gnl|tetNig1|chrUn_random (114298839-114298693) | |
| 136-273, gnl|xenTro1|scaffold_174 (1095253-1095399) | |
| 570-702, gnl|bosTau2|chr13 (15809202-15809334) | |
| 570-702, gnl|Mm7|chr10 (38868555-38868687) | |
| 725-875, gnl|bosTau2|chr9 (19384524-19384674) | |
| 725-875, gnl|canFam2|chr12 (71585983-71586223) | |
| 725-875, gnl|dasNov1|scaffold_28423 (2269-2516) | |
| 725-875, gnl|echTel1|scaffold_95815 (4318-4561) | |
| 725-875, gnl|hg17|chr6 (112549879-112550112) | |
| 725-875, gnl|Hg17|chr6 (112550099-112549949) | |
| 725-875, gnl|loxAfr1|scaffold_11879 (94434-94681) | |
| 725-875, gnl|mm7|chr10 (38872149-38871913) | |
| 725-875, gnl|Mm7|chr10 (38871927-38872077) | |
| 725-875, gnl|monDom2|scaffold_0 (107342936-107342694) | |
| 725-875, gnl|oryCun1|scaffold_201691 (6143-5903) | |
| 725-875, gnl|panTro1|chr5 (114896974-114897207) | |
| 725-875, gnl|rheMac2|chr4 (151822197-151821964) | |
| 725-875, gnl|rn3|chr20 (43266776-43266541) | |
| 725-875, gnl|xenTro1|scaffold_174 (1091573-1091813) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| cty (0.10408) |