Non-Coding RNA Search

Ss1.1-rnca03b_k23.5

Sequence:


               
               GTGCGGGGCTGCCTGCCTCCATGGATCTTAACGCTGGAGGTGATTCTCTTTCTTGTCTTC
TTCTTTTTCACCTCCTATGACACTTCTTCAAAGGCTCAGAAGGAGTTCCTGGGGACCTAT
CAAGGCTTCCAGGATGTGGTCATCATTGCAGCCCTTGGCTTGGGCTTCCTCAATACATCT
TTGCGGAGACACTGCTGGAGCAGCGTGGCCTTCAATCTCTTTCTGCTGGCTCTCGGGGTA
CAGTTGACGCTCCTGCTGGATGGCTTCCTGAGCCCGACCTTTTCCAGGAAGATGAGCATC
AATCTGACTAGTATTCAGAGAGCCACCGTGAGCGCTACGTCTGTGCTGATCTCAGCGGGT
GCCATCCTGGGGAAGGTCAACCTGGTGCAGCTGGTGTTCATGACAGTGATAGAGGTGACC
GCCTTCAGCACCACAAGGATGGTGGCCAAGAGATTCCTCAATGTGGACAACCACGTAAAC
ATGATGTACATCCATGTGTTTGCGGCCTATTTCGGGCTGACTGTGAGCTGCTGCCTCCCG
AGGCCTCTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCGGGGCTGCCTGCCTCCATGGATCTTAACGCTGGAGGTGATTCTCTTTCTTGTCTTC
TTCTTTTTCACCTCCTATGACACTTCTTCAAAGGCTCAGAAGGAGTTCCTGGGGACCTAT
CAAGGCTTCCAGGATGTGGTCATCATTGCAGCCCTTGGCTTGGGCTTCCTCAATACATCT
TTGCGGAGACACTGCTGGAGCAGCGTGGCCTTCAATCTCTTTCTGCTGGCTCTCGGGGTA
CAGTTGACGCTCCTGCTGGATGGCTTCCTGAGCCCGACCTTTTCCAGGAAGATGAGCATC
AATCTGACTAGTATTCAGAGAGCCACCGTGAGCGCTACGTCTGTGCTGATCTCAGCGGGT
GCCATCCTGGGGAAGGTCAACCTGGTGCAGCTGGTGTTCATGACAGTGATAGAGGTGACC
GCCTTCAGCACCACAAGGATGGTGGCCAAGAGATTCCTCAATGTGGACAACCACGTAAAC
ATGATGTACATCCATGTGTTTGCGGCCTATTTCGGGCTGACTGTGAGCTGCTGCCTCCCG
AGGCCTCTGCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               RHL_HYLPI

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               RHL_HYLPI

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               127-311, gnl|bosTau2|chr2 (80228405-80228221)
               

               
               127-311, gnl|canFam2|chr2 (77367296-77367449)
               

               
               127-311, gnl|dasNov1|scaffold_69046 (6946-7099)
               

               
               127-311, gnl|echTel1|scaffold_321214 (48507-48354)
               

               
               127-311, gnl|fr1|chrUn (68383365-68383518)
               

               
               127-311, gnl|hg17|chr1 (25356377-25356530)
               

               
               127-311, gnl|Hg17|chr1 (25356382-25356566)
               

               
               127-311, gnl|loxAfr1|scaffold_2232 (135671-135518)
               

               
               127-311, gnl|mm7|chr4 (134254749-134254902)
               

               
               127-311, gnl|Mm7|chr4 (134254754-134254938)
               

               
               127-311, gnl|monDom2|scaffold_91 (2357027-2356874)
               

               
               127-311, gnl|oryCun1|scaffold_125222 (3827-3679)
               

               
               127-311, gnl|panTro1|chr1_random (55743893-55744046)
               

               
               127-311, gnl|rheMac2|chr1 (27972156-27972003)
               

               
               127-311, gnl|rn3|chr5 (153658243-153658396)
               

               
               127-311, gnl|tetNig1|chr10 (3296447-3296310)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-311, gnl|bosTau2|chr2 (80228405-80228221)
               

               
               127-311, gnl|canFam2|chr2 (77367296-77367449)
               

               
               127-311, gnl|dasNov1|scaffold_69046 (6946-7099)
               

               
               127-311, gnl|echTel1|scaffold_321214 (48507-48354)
               

               
               127-311, gnl|fr1|chrUn (68383365-68383518)
               

               
               127-311, gnl|hg17|chr1 (25356377-25356530)
               

               
               127-311, gnl|Hg17|chr1 (25356382-25356566)
               

               
               127-311, gnl|loxAfr1|scaffold_2232 (135671-135518)
               

               
               127-311, gnl|mm7|chr4 (134254749-134254902)
               

               
               127-311, gnl|Mm7|chr4 (134254754-134254938)
               

               
               127-311, gnl|monDom2|scaffold_91 (2357027-2356874)
               

               
               127-311, gnl|oryCun1|scaffold_125222 (3827-3679)
               

               
               127-311, gnl|panTro1|chr1_random (55743893-55744046)
               

               
               127-311, gnl|rheMac2|chr1 (27972156-27972003)
               

               
               127-311, gnl|rn3|chr5 (153658243-153658396)
               

               
               127-311, gnl|tetNig1|chr10 (3296447-3296310)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               eli (0.303628)
               

               
               nca (0.136874)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.303628)
               

               
               nca (0.136874)
               

               
               nbm (0.0993246)

	127-311, gnl\|bosTau2\|chr2 (80228405-80228221)
	127-311, gnl\|canFam2\|chr2 (77367296-77367449)
	127-311, gnl\|dasNov1\|scaffold_69046 (6946-7099)
	127-311, gnl\|echTel1\|scaffold_321214 (48507-48354)
	127-311, gnl\|fr1\|chrUn (68383365-68383518)
	127-311, gnl\|hg17\|chr1 (25356377-25356530)
	127-311, gnl\|Hg17\|chr1 (25356382-25356566)
	127-311, gnl\|loxAfr1\|scaffold_2232 (135671-135518)
	127-311, gnl\|mm7\|chr4 (134254749-134254902)
	127-311, gnl\|Mm7\|chr4 (134254754-134254938)
	127-311, gnl\|monDom2\|scaffold_91 (2357027-2356874)
	127-311, gnl\|oryCun1\|scaffold_125222 (3827-3679)
	127-311, gnl\|panTro1\|chr1_random (55743893-55744046)
	127-311, gnl\|rheMac2\|chr1 (27972156-27972003)
	127-311, gnl\|rn3\|chr5 (153658243-153658396)
	127-311, gnl\|tetNig1\|chr10 (3296447-3296310)