Non-Coding RNA Search

Ss1.1-rnca04b_c4.5

Sequence:


               
               GTTAAGGGGGCCACCTCCATTCTGGGGAATTTATATTTGAACTGAGGCTGTGGCCTCAAA
GCCCAGGAACTTTTTTTATTACAATCGCTTAGGAAGTAAAGCCTTGTCTCCCTCCCTGTT
CTCTGCCTCCTGTACCTCTCTCCACTTCCACCCCTGACCATCCTCAGCCCCAGTCCTGCC
TTCCCTGCCCCTCCAGGGGCCATGAGTGCCTGGGTTTCTCATACCCCCACCGGGTTGCAG
CAGGGGAGGGAGGGACATTTTATGATGAACCAAAAATTCCGTGTGTGCGTGTGGGGGGGT
GGGAGGGTGGAGGAGGGTGAGGGGTGCCGCCCATAGGCCACAAATCTCTACAAGTGCCTG
CTGTCCCTCTCCTATTCCCTACCCCAGTGCCAGTCCAGCCCCTTCACCCCCAGCTGCTCC
TAAGGACTAGCCCATAGGCAGGCCAGTGGGAAGGGGGTGTCCTGAAACCAAACTGGAAGC
CCCCTCTGCCTCCCAGCCGGGGCCCCTGGGGTGGGGGTCTGGTCAAGCCTTATTCTGTAT
TGGGGTCAGGGTCGGGGGGGGGTAGTTGGGGGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAGGGGGCCACCTCCATTCTGGGGAATTTATATTTGAACTGAGGCTGTGGCCTCAAA
GCCCAGGAACTTTTTTTATTACAATCGCTTAGGAAGTAAAGCCTTGTCTCCCTCCCTGTT
CTCTGCCTCCTGTACCTCTCTCCACTTCCACCCCTGACCATCCTCAGCCCCAGTCCTGCC
TTCCCTGCCCCTCCAGGGGCCATGAGTGCCTGGGTTTCTCATACCCCCACCGGGTTGCAG
CAGGGGAGGGAGGGACATTTTATGATGAACCAAAAATTCCGTGTGTGCGTGTGGGGGGGT
GGGAGGGTGGAGGAGGGTGAGGGGTGCCGCCCATAGGCCACAAATCTCTACAAGTGCCTG
CTGTCCCTCTCCTATTCCCTACCCCAGTGCCAGTCCAGCCCCTTCACCCCCAGCTGCTCC
TAAGGACTAGCCCATAGGCAGGCCAGTGGGAAGGGGGTGTCCTGAAACCAAACTGGAAGC
CCCCTCTGCCTCCCAGCCGGGGCCCCTGGGGTGGGGGTCTGGTCAAGCCTTATTCTGTAT
TGGGGTCAGGGTCGGGGGGGGGTAGTTGGGGGCTGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-387, - strand, RNAz p=0.803263
               

               
               469-576, - strand, RNAz p=0.719164

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-387, - strand, RNAz p=0.803263
               

               
               469-576, - strand, RNAz p=0.719164

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               184-265, + strand, RNAmicro p=0.98908
               

               
               391-502, - strand, RNAmicro p=0.985905
               

               
               403-537, + strand, RNAmicro p=0.966947

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               184-265, + strand, RNAmicro p=0.98908
               

               
               391-502, - strand, RNAmicro p=0.985905
               

               
               403-537, + strand, RNAmicro p=0.966947

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-576, gnl|bosTau2|chr18 (44961734-44961160)
               

               
               1-576, gnl|Hg17|chr19 (47444193-47443602)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr18 (44961734-44961160)
               

               
               1-576, gnl|Hg17|chr19 (47444193-47443602)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	1-387, - strand, RNAz p=0.803263
	469-576, - strand, RNAz p=0.719164

	184-265, + strand, RNAmicro p=0.98908
	391-502, - strand, RNAmicro p=0.985905
	403-537, + strand, RNAmicro p=0.966947

	1-576, gnl\|bosTau2\|chr18 (44961734-44961160)
	1-576, gnl\|Hg17\|chr19 (47444193-47443602)