Ss1.1-rnca05b_c15.5.5
|
GCGAGCGGAGGCCAGAGGGCAGCACTGACAGCCGCATCAGCATTGCTCCCGGGACTGGAC
TCTTCGCGGGGCTGCAGACCAAGGAAAATCATTACCATGAGAATTGCAGTGATAGCCTTC
TGCCTCTGGGGCTTCGCCTCTGCCCTTCCAGTTAAACAGACTAATTCTGGCAGCTCGGAG
GAAAAGCTGCTTTCCAACAAATACACAGATGCTGTAGCCACATTGCTAAAGCCTGACCCA
TCTCAGAAGCAGACTTTCCTAGCGCCACAGAATACTATTTCCTCGGAGGAAACGGACGAC
TTCAAACAAGAGACCCTGCCAAGCAAGTCCAACGAAAGCCCTGAGCAAACAGACGATGTG
GACGACGACGACGACGAAGACCACGTGGACAGCAGGGACACGGACTCCGAGGAAGCTGAT
CACGCTGACGACGCTGACCGATCCGACGAGTCTCATCACTCCGATGAATCCGATGAGCTG
GTCACCGATTTCCCCACCGACACCCCAGCAACCGACGTCACTCCGGCTGTCCCCACGGGA
GACCCCAATGATGGCCGCGGGGATAGTGTGGTCTATGGACTGAGGTCAAAATCTAAGAAG
TTCCGCAGATCCGAAGCCCAGCAGCTGGATGCCACAGAGGAAGACCTCACGTCACATGTG
GAAAGTGAGGAGACGGATGGTACCCCCAAGGCCATCCTCGTTGCCCAGCGCCTGCACGTG
GCTTCTGACTTGGACAGCCAAGAGAAGGACAGTCAGGAGACGAGTCAGCCGGATGACCGC
AGTGTGGAAACCCGCAGCCAGGAGCAGTCCAAAGAATACACGATCAAGACCTATGATGGG
AGCAATGAGCATTCCAATGTGATTGAGAGTCAGGAAAATCCCAAAGTCAGCCAAGAATTC
CACAGCCATGAAGACAAGCTGGTCCCAGACTCTAAGAGCGAAGAAGACAAACACCTGAAA
CTTCGAGTTTCTCATGAATTAGAGAGTGCGTCTTCTGAGATCAACTGAGAGAAATACAAT
GTCTTACTTTGCTTTTAGTAAAAAGAAAAAAAAACACATTGTAGCGAGGTGGGAGAAAAT
ATGAAAGGCTTATTTCTCAGCTTAGTTGGTGAATGTATATGTGTGTGGCTCTGGAAACAA
ATAATATTTTTGATCATTAGTTTAGTGTGTGGCTTCATGGTAACACCCTTGTCAACTAAA
AGCTTCAGGGTTTAGTCGACGGTCTTTCCGTATAAGAAATACAAGCCGTCACTGATTTGT
AATGTTTGCTATCCTTTTATGAATAGAAATTTATGTAGAAGCAAACAAAACACTGACACA
CTTATAAGAGAGGATATAAAATTTCATGTCACTCTGATCTTTTGTTTTTTAAATTAGTGT
ATATTTTGTTGATTATTTTTGTTGGTGTGAATAAAATATCTCGAATGTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGAGCGGAGGCCAGAGGGCAGCACTGACAGCCGCATCAGCATTGCTCCCGGGACTGGAC
TCTTCGCGGGGCTGCAGACCAAGGAAAATCATTACCATGAGAATTGCAGTGATAGCCTTC
TGCCTCTGGGGCTTCGCCTCTGCCCTTCCAGTTAAACAGACTAATTCTGGCAGCTCGGAG
GAAAAGCTGCTTTCCAACAAATACACAGATGCTGTAGCCACATTGCTAAAGCCTGACCCA
TCTCAGAAGCAGACTTTCCTAGCGCCACAGAATACTATTTCCTCGGAGGAAACGGACGAC
TTCAAACAAGAGACCCTGCCAAGCAAGTCCAACGAAAGCCCTGAGCAAACAGACGATGTG
GACGACGACGACGACGAAGACCACGTGGACAGCAGGGACACGGACTCCGAGGAAGCTGAT
CACGCTGACGACGCTGACCGATCCGACGAGTCTCATCACTCCGATGAATCCGATGAGCTG
GTCACCGATTTCCCCACCGACACCCCAGCAACCGACGTCACTCCGGCTGTCCCCACGGGA
GACCCCAATGATGGCCGCGGGGATAGTGTGGTCTATGGACTGAGGTCAAAATCTAAGAAG
TTCCGCAGATCCGAAGCCCAGCAGCTGGATGCCACAGAGGAAGACCTCACGTCACATGTG
GAAAGTGAGGAGACGGATGGTACCCCCAAGGCCATCCTCGTTGCCCAGCGCCTGCACGTG
GCTTCTGACTTGGACAGCCAAGAGAAGGACAGTCAGGAGACGAGTCAGCCGGATGACCGC
AGTGTGGAAACCCGCAGCCAGGAGCAGTCCAAAGAATACACGATCAAGACCTATGATGGG
AGCAATGAGCATTCCAATGTGATTGAGAGTCAGGAAAATCCCAAAGTCAGCCAAGAATTC
CACAGCCATGAAGACAAGCTGGTCCCAGACTCTAAGAGCGAAGAAGACAAACACCTGAAA
CTTCGAGTTTCTCATGAATTAGAGAGTGCGTCTTCTGAGATCAACTGAGAGAAATACAAT
GTCTTACTTTGCTTTTAGTAAAAAGAAAAAAAAACACATTGTAGCGAGGTGGGAGAAAAT
ATGAAAGGCTTATTTCTCAGCTTAGTTGGTGAATGTATATGTGTGTGGCTCTGGAAACAA
ATAATATTTTTGATCATTAGTTTAGTGTGTGGCTTCATGGTAACACCCTTGTCAACTAAA
AGCTTCAGGGTTTAGTCGACGGTCTTTCCGTATAAGAAATACAAGCCGTCACTGATTTGT
AATGTTTGCTATCCTTTTATGAATAGAAATTTATGTAGAAGCAAACAAAACACTGACACA
CTTATAAGAGAGGATATAAAATTTCATGTCACTCTGATCTTTTGTTTTTTAAATTAGTGT
ATATTTTGTTGATTATTTTTGTTGGTGTGAATAAAATATCTCGAATGTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
311-611, gnl|bosTau2|chr6 (15319692-15319986) |
|
311-611, gnl|canFam2|chr32 (14320553-14320932) |
|
311-611, gnl|echTel1|scaffold_314735 (55153-55570) |
|
311-611, gnl|hg17|chr4 (89259740-89260175) |
|
311-611, gnl|Hg17|chr4 (89259804-89260119) |
|
311-611, gnl|loxAfr1|scaffold_51969 (16379-15944) |
|
311-611, gnl|mm7|chr5 (103629595-103629974) |
|
311-611, gnl|Mm7|chr5 (103629646-103629919) |
|
311-611, gnl|monDom2|scaffold_37 (15254046-15253695) |
|
311-611, gnl|panTro1|chr3 (105251939-105252374) |
|
311-611, gnl|rheMac2|chr5 (80946929-80947364) |
|
311-611, gnl|rn3|chr14 (6423844-6423460) |
| |
|
755-1430, gnl|bosTau2|chr6 (15320762-15321444) |
|
755-1430, gnl|Hg17|chr4 (89260890-89261659) |
|
755-1430, gnl|Mm7|chr5 (103630705-103631433) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
311-611, gnl|bosTau2|chr6 (15319692-15319986) |
|
311-611, gnl|canFam2|chr32 (14320553-14320932) |
|
311-611, gnl|echTel1|scaffold_314735 (55153-55570) |
|
311-611, gnl|hg17|chr4 (89259740-89260175) |
|
311-611, gnl|Hg17|chr4 (89259804-89260119) |
|
311-611, gnl|loxAfr1|scaffold_51969 (16379-15944) |
|
311-611, gnl|mm7|chr5 (103629595-103629974) |
|
311-611, gnl|Mm7|chr5 (103629646-103629919) |
|
311-611, gnl|monDom2|scaffold_37 (15254046-15253695) |
|
311-611, gnl|panTro1|chr3 (105251939-105252374) |
|
311-611, gnl|rheMac2|chr5 (80946929-80947364) |
|
311-611, gnl|rn3|chr14 (6423844-6423460) |
| |
|
755-1430, gnl|bosTau2|chr6 (15320762-15321444) |
|
755-1430, gnl|Hg17|chr4 (89260890-89261659) |
|
755-1430, gnl|Mm7|chr5 (103630705-103631433) |
|
ute (28.2831) |
|
spc (3.62771) |
|
amn (2.92398) |
|
mga (2.56328) |
|
ret (2.18847) |
|
nca (1.91623) |
|
nbm (1.88717) |
|
nmm (1.85923) |
|
cut (1.35939) |
|
cmu (1.30475) |
|
pgl (1.30332) |
|
fco (1.25766) |
|
ova (1.16219) |
|
nje (0.8296) |
|
kid (0.778412) |
|
pro (0.512033) |
|
sug (0.509165) |
|
cbe (0.478469) |
|
hyp (0.42851) |
|
pla (0.401016) |
|
jej (0.395687) |
|
thg (0.380373) |
|
ebs (0.354904) |
|
ill (0.351185) |
|
rec (0.346141) |
|
fhi (0.339155) |
|
eep (0.245128) |
|
pan (0.23596) |
|
ece (0.229305) |
|
hea (0.204499) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
sin (0.174948) |
|
eye (0.170503) |
|
cki (0.165235) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
che (0.136314) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
cbr (0.127975) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
ute (28.2831) |
|
spc (3.62771) |
|
amn (2.92398) |
|
mga (2.56328) |
|
ret (2.18847) |
|
nca (1.91623) |
|
nbm (1.88717) |
|
nmm (1.85923) |
|
cut (1.35939) |
|
cmu (1.30475) |
|
pgl (1.30332) |
|
fco (1.25766) |
|
ova (1.16219) |
|
nje (0.8296) |
|
kid (0.778412) |
|
pro (0.512033) |
|
sug (0.509165) |
|
cbe (0.478469) |
|
hyp (0.42851) |
|
pla (0.401016) |
|
jej (0.395687) |
|
thg (0.380373) |
|
ebs (0.354904) |
|
ill (0.351185) |
|
rec (0.346141) |
|
fhi (0.339155) |
|
eep (0.245128) |
|
pan (0.23596) |
|
ece (0.229305) |
|
hea (0.204499) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
sin (0.174948) |
|
eye (0.170503) |
|
cki (0.165235) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
che (0.136314) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
cbr (0.127975) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ecc (0.115035) |
