Non-Coding RNA Search

Ss1.1-rnca06b_m6.5

Sequence:


               
               CACCCGTCAGTGGCTTCTTCCCTGGGTTCCTTCCTGAGGATTTGGTGGAAAGCAGCAGCC
AGGAAGATCCGTCCCTGTCCCCCGGGCAGGCGCGCACTGTGCCTGTGATGGGTTAGACTC
ACTGAGCACCCCATCCCCCTTCGTTCCCCACCCTACTCCCTTAGTTGGAGCCCTTTCTAC
CTGTGGGGCACAGCTTCAATGAGGTGGGGTCGTTTCTGCTTTGGGGGGAAAGGGAAGTAA
GTTTCAGAAATAAGTTCTGTGTGGAAGGCCTTGGAAGAGTTTGTTCCATCTGGCCATACA
AGGGGGTCTCTGCCTGGGTCTGGTTGCACTTGGAGAAGTTATTGTAGCTGGTGGAATCAC
CCCAGCTCTTCCCAAACCATGGTGAGGTATTAGCCTCCCCTGGCCAGATCTAGTCGGGAC
CGTCTAACCCTAATCCTGCCTATCTGGGCCTTGATGACCCTGACCCCCAGCATCCCCCTC
CCGGTGTGCCTGACACTGGCCTTATCCCAGAGCCTCCAGATTCCAGCTGGTACACGGGAG
AGATGGGGACGTACAGGCCACCTTCCTTCTGGCAAGGCCTCTTATTTATTACCATTGCTG
TAGGGCTTTCGGTTCCCACTTCTTTTGGTAGCTGCATAGAGTTTGGATAGGTTTCTGCTC
TGACCCCATGTGTGAACTCCCCATGGGTGACACACCCACCCACCCTGTTCTGTTCCTTGG
AATGCTTTGCCTCCGCTTTGTGCTGTTTGCGTTTTTTTCTCCACCTTAGCAGCAGTTACT
ATGAGTTTCCTAAATTGAGGCGCATCTGTACCAAGGCAACGTTAACTTTTGATTTTTTGG
TCAATTTGTTTTAAGCTCTTTTGTCACCAATAAAAATCTTAATAAAATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCGTCAGTGGCTTCTTCCCTGGGTTCCTTCCTGAGGATTTGGTGGAAAGCAGCAGCC
AGGAAGATCCGTCCCTGTCCCCCGGGCAGGCGCGCACTGTGCCTGTGATGGGTTAGACTC
ACTGAGCACCCCATCCCCCTTCGTTCCCCACCCTACTCCCTTAGTTGGAGCCCTTTCTAC
CTGTGGGGCACAGCTTCAATGAGGTGGGGTCGTTTCTGCTTTGGGGGGAAAGGGAAGTAA
GTTTCAGAAATAAGTTCTGTGTGGAAGGCCTTGGAAGAGTTTGTTCCATCTGGCCATACA
AGGGGGTCTCTGCCTGGGTCTGGTTGCACTTGGAGAAGTTATTGTAGCTGGTGGAATCAC
CCCAGCTCTTCCCAAACCATGGTGAGGTATTAGCCTCCCCTGGCCAGATCTAGTCGGGAC
CGTCTAACCCTAATCCTGCCTATCTGGGCCTTGATGACCCTGACCCCCAGCATCCCCCTC
CCGGTGTGCCTGACACTGGCCTTATCCCAGAGCCTCCAGATTCCAGCTGGTACACGGGAG
AGATGGGGACGTACAGGCCACCTTCCTTCTGGCAAGGCCTCTTATTTATTACCATTGCTG
TAGGGCTTTCGGTTCCCACTTCTTTTGGTAGCTGCATAGAGTTTGGATAGGTTTCTGCTC
TGACCCCATGTGTGAACTCCCCATGGGTGACACACCCACCCACCCTGTTCTGTTCCTTGG
AATGCTTTGCCTCCGCTTTGTGCTGTTTGCGTTTTTTTCTCCACCTTAGCAGCAGTTACT
ATGAGTTTCCTAAATTGAGGCGCATCTGTACCAAGGCAACGTTAACTTTTGATTTTTTGG
TCAATTTGTTTTAAGCTCTTTTGTCACCAATAAAAATCTTAATAAAATAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               3-574, gnl|bosTau2|chr7 (2313913-2314456)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-574, gnl|bosTau2|chr7 (2313913-2314456)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               csk (0.562984)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               fty (0.351679)
               

               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.562984)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               fty (0.351679)
               

               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	csk (0.562984)
	nca (0.410621)
	che (0.408942)
	fty (0.351679)
	cje (0.330469)
	cte (0.29274)
	cbe (0.239234)
	ece (0.229305)
	tes (0.207814)
	nlu (0.191681)
	cmu (0.186393)
	ton (0.1755)
	sin (0.174948)
	duo (0.172801)
	cut (0.169924)
	nco (0.161734)
	cst (0.140036)
	hlv (0.139256)
	ese (0.126502)
	bla (0.124347)
	pgl (0.118483)
	jej (0.0989218)