Non-Coding RNA Search

Ss1.1-rnca07b_e5.5

Sequence:


               
               AGATGTGGCTGTGAAGTCTCCTTATCCCTGAGTATTTGAGAGGAGCTGGCACAGGGGCTG
GCAGACGTGCCCGAGAGCTATGGCAAAGAGTGGACTTGTAATTTCCATCCTGGTTATCAC
CTTACTCCTGGACCAGACCACCAGCCACGCGGCCAAATTCAAAGCCAAGAAGCACAGCAA
ACGCCGAGTAAAAGAAAATGATGGAGACCTGAAGACTCAAGTGGAAAAGCTCTGGAGAGA
GGTCAACGCCCTGAAGGAAATGCAAGCCCTGCAGACAGTCTGTCTGCGGGGCACCAAGGT
CCACAAGAAGTGCTACCTTGCTTCAGAAGCTTCGAAGCACTTCCACGAAGCCAACGAAGA
CTGCATTTCCAAGGGAGGCACCCTGGCGGTGCCCAGAAGCTCCGACGAAATCAACGCCCT
CCGAGACTACGGGAAAAGGAGCCTGCCGGGGGTCAACGACTTCTGGCTGGGCATCAACGA
CATGGTCACGGAAGGCAAGTTTGTCGACGTCAATGGACTCGCCATCTCCTTCCTCAACTG
GGACCAGGCACAGCCGAACGGTGGCAAGCGGGAGAACCGCGTCTTCCTGTCCCAGTCATC
TCAGGGCAAATGGAGCGATGAGGTCTGTCGTAGCAGCAAGAGGTACATATGTGAGTTCAC
CATCCCTTAACAGACCCTTCGGAAGGGTCTCTTCCACGCGAGTCCGGTCATGAATGATAG
GCTGATGGTTTCCGCGAATAAGTCAACATGGTCCCACAGGAGGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGTGGCTGTGAAGTCTCCTTATCCCTGAGTATTTGAGAGGAGCTGGCACAGGGGCTG
GCAGACGTGCCCGAGAGCTATGGCAAAGAGTGGACTTGTAATTTCCATCCTGGTTATCAC
CTTACTCCTGGACCAGACCACCAGCCACGCGGCCAAATTCAAAGCCAAGAAGCACAGCAA
ACGCCGAGTAAAAGAAAATGATGGAGACCTGAAGACTCAAGTGGAAAAGCTCTGGAGAGA
GGTCAACGCCCTGAAGGAAATGCAAGCCCTGCAGACAGTCTGTCTGCGGGGCACCAAGGT
CCACAAGAAGTGCTACCTTGCTTCAGAAGCTTCGAAGCACTTCCACGAAGCCAACGAAGA
CTGCATTTCCAAGGGAGGCACCCTGGCGGTGCCCAGAAGCTCCGACGAAATCAACGCCCT
CCGAGACTACGGGAAAAGGAGCCTGCCGGGGGTCAACGACTTCTGGCTGGGCATCAACGA
CATGGTCACGGAAGGCAAGTTTGTCGACGTCAATGGACTCGCCATCTCCTTCCTCAACTG
GGACCAGGCACAGCCGAACGGTGGCAAGCGGGAGAACCGCGTCTTCCTGTCCCAGTCATC
TCAGGGCAAATGGAGCGATGAGGTCTGTCGTAGCAGCAAGAGGTACATATGTGAGTTCAC
CATCCCTTAACAGACCCTTCGGAAGGGTCTCTTCCACGCGAGTCCGGTCATGAATGATAG
GCTGATGGTTTCCGCGAATAAGTCAACATGGTCCCACAGGAGGCTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CLEC1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLEC1_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-553, - strand, RNAz p=0.986595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-553, - strand, RNAz p=0.986595

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-194, gnl|bosTau2|chr18 (4201241-4201048)
               

               
               1-194, gnl|Hg17|chr16 (76613947-76614139)
               

               
               1-194, gnl|Mm7|chr8 (113030802-113030997)
               


               
               275-764, gnl|bosTau2|chr18 (4192570-4192081)
               

               
               275-764, gnl|Hg17|chr16 (76621841-76622353)
               

               
               275-764, gnl|Mm7|chr8 (113038223-113038679)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-194, gnl|bosTau2|chr18 (4201241-4201048)
               

               
               1-194, gnl|Hg17|chr16 (76613947-76614139)
               

               
               1-194, gnl|Mm7|chr8 (113030802-113030997)
               


               
               275-764, gnl|bosTau2|chr18 (4192570-4192081)
               

               
               275-764, gnl|Hg17|chr16 (76621841-76622353)
               

               
               275-764, gnl|Mm7|chr8 (113038223-113038679)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.273748)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)

	1-194, gnl\|bosTau2\|chr18 (4201241-4201048)
	1-194, gnl\|Hg17\|chr16 (76613947-76614139)
	1-194, gnl\|Mm7\|chr8 (113030802-113030997)

	275-764, gnl\|bosTau2\|chr18 (4192570-4192081)
	275-764, gnl\|Hg17\|chr16 (76621841-76622353)
	275-764, gnl\|Mm7\|chr8 (113038223-113038679)