Ss1.1-rnca08b_d3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAGATCCTGAACATCAGAGAGCTAATGGTAACTTAAAATATTTTGAGTATATAATGGCT AAAGAAAAAGAGGCCAATAAATCTGCTTCAGATGACCAATCTAATCAGAAAACCACACTG AAGAAAAAAGGGGTTGCTGTGGATTACCTGCCAGAGAGACAGAAGTACGAAATGCTGTGC CGTGGGGAGGGTATCAAAATGACTCCTCGGAGACAGAAAAAACTCTTTTGCCGATACCAT GATGGAAACCGGAATCCTAAATTTATTCTGGCTCCAGCCAAACAGGAGGATGAGTGGGAC AAGCCTCGTATTATCCGTTTCCATGATATTATTTCTGATGCAGAAATTGACATTGTTAAA GATCTAGCAAAACCAAGGCTGAGGCGAGCCACCATTTCAAACCCAATAACAGGAGACTTG GAGACGGTACATTACAGAATTAGCAAAAGTGCCTGGCTCTCTGGCTATGAAAACCCTGTG GTATCTCGACTTAATATGAGAATACAAGATCTAACAGGACTAGATGTTTCCACAGCAGAG GAATTACAGGTAGCAAATTATGGAGTTGGAGGACAGTATGAACCTCATTTTGATTTTGCA CGGAAAGATGAGCCAGATGCTTTCAAGGAGCTGGGGACAGGAAATAGAATTGCTACATGG CTGTTTTATATGAGTGATGTGTCAGCAGGAGGAGCCACTGTTTTTCCTGAAGTAGGAGCT AGTGTTTGGCCCAAAAAGGGAACTGCTGTTTTCTGGTATAATCTGTTTGCCAGTGGAGAA GGAGATTATAGTACACGGCATGCAGCCTGTCCAGTGCTGGTTGGAAACAAATGGGTATCC AATAAATGGCTCCATGAACGTGGACAGGAATTTCGAAGACCATGCACCTTGTCAGAATTG GAATGACAAAGAGACTCCCCTTTCTCTCCTGTTGTACTTTAATGTGTCTGATACACACAT TTCCCAGTCTTAACCTTCAAGAGTTTACAGCTGACTAACACTCCATGATTGATTTAGTCA TGAACCTCATCCCATGTTTCATCTTTGGACAATCACTAACTTTGTGGGGGTTTTTCTTTT AAAAGTAACACTAAACCACCACATTGTACATATCAAACCTTAAAGTTCAGTTGGTATCAC AGAGAACAAAGCAAGGCAGGGTTAAAAATGAGGAATTTTTATATCTATCTTCTATTTTAA AGAACTTTTTTTCCCCTTGGATAAAAAATACAGTTTCAGCATCCAATTATAGTATTTCAG TACATCTCAATTTGTGGGTAGTAGGCTAGAATTGGCAATGTAATTAAGGAACAGCTATGT TTACCTAGTCTTAACTCTTTGCTGGATCTGCCTGACGAGTAGCAGTAAACTAGCCCTCTA AACTGGGATCCATACAATGTTTGCCCCTCCAGATTCTATTTTAATTTGATTTTGTTTCTC CCAAGCCCTTTTTAAAGTATGCTATATTTTACCAATCCCCTTCTTTCACAGCTCCTCTGT GAATTCAATCTGAGTTTTAAAAAAATTTTTTTAATCAAAGTATTTTAACAGAAGGTCCTA CATCAAAACCCTGGACCTTTAACCAAAATGATTATTACTTAACCTGTTTCTTCTTTTTCT CAAATCACGCATGATTTTGTCCAAAAACATTTTGCTGTTTTTCTTAGTGCTAATACCTTG CCTCTTATTCCTGCTGCATACAGCAGAGGTGATGATGTTGGCATTTGGATTAAATAAATA TTGTGCCTTAGGAGACTGGAAATTTTTAAATGTACAAGTCCTTTCAGTGATGAGGGAATT GATAAAAAAGGAAATCTTTTTCCTACGAAGCCAAAATGTTTGTTTTTGCAATTCTGAAAT GTGTTGTGACAACAATGACCTATTTATGATCTTAAATCTTTTTTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAGATCCTGAACATCAGAGAGCTAATGGTAACTTAAAATATTTTGAGTATATAATGGCT AAAGAAAAAGAGGCCAATAAATCTGCTTCAGATGACCAATCTAATCAGAAAACCACACTG AAGAAAAAAGGGGTTGCTGTGGATTACCTGCCAGAGAGACAGAAGTACGAAATGCTGTGC CGTGGGGAGGGTATCAAAATGACTCCTCGGAGACAGAAAAAACTCTTTTGCCGATACCAT GATGGAAACCGGAATCCTAAATTTATTCTGGCTCCAGCCAAACAGGAGGATGAGTGGGAC AAGCCTCGTATTATCCGTTTCCATGATATTATTTCTGATGCAGAAATTGACATTGTTAAA GATCTAGCAAAACCAAGGCTGAGGCGAGCCACCATTTCAAACCCAATAACAGGAGACTTG GAGACGGTACATTACAGAATTAGCAAAAGTGCCTGGCTCTCTGGCTATGAAAACCCTGTG GTATCTCGACTTAATATGAGAATACAAGATCTAACAGGACTAGATGTTTCCACAGCAGAG GAATTACAGGTAGCAAATTATGGAGTTGGAGGACAGTATGAACCTCATTTTGATTTTGCA CGGAAAGATGAGCCAGATGCTTTCAAGGAGCTGGGGACAGGAAATAGAATTGCTACATGG CTGTTTTATATGAGTGATGTGTCAGCAGGAGGAGCCACTGTTTTTCCTGAAGTAGGAGCT AGTGTTTGGCCCAAAAAGGGAACTGCTGTTTTCTGGTATAATCTGTTTGCCAGTGGAGAA GGAGATTATAGTACACGGCATGCAGCCTGTCCAGTGCTGGTTGGAAACAAATGGGTATCC AATAAATGGCTCCATGAACGTGGACAGGAATTTCGAAGACCATGCACCTTGTCAGAATTG GAATGACAAAGAGACTCCCCTTTCTCTCCTGTTGTACTTTAATGTGTCTGATACACACAT TTCCCAGTCTTAACCTTCAAGAGTTTACAGCTGACTAACACTCCATGATTGATTTAGTCA TGAACCTCATCCCATGTTTCATCTTTGGACAATCACTAACTTTGTGGGGGTTTTTCTTTT AAAAGTAACACTAAACCACCACATTGTACATATCAAACCTTAAAGTTCAGTTGGTATCAC AGAGAACAAAGCAAGGCAGGGTTAAAAATGAGGAATTTTTATATCTATCTTCTATTTTAA AGAACTTTTTTTCCCCTTGGATAAAAAATACAGTTTCAGCATCCAATTATAGTATTTCAG TACATCTCAATTTGTGGGTAGTAGGCTAGAATTGGCAATGTAATTAAGGAACAGCTATGT TTACCTAGTCTTAACTCTTTGCTGGATCTGCCTGACGAGTAGCAGTAAACTAGCCCTCTA AACTGGGATCCATACAATGTTTGCCCCTCCAGATTCTATTTTAATTTGATTTTGTTTCTC CCAAGCCCTTTTTAAAGTATGCTATATTTTACCAATCCCCTTCTTTCACAGCTCCTCTGT GAATTCAATCTGAGTTTTAAAAAAATTTTTTTAATCAAAGTATTTTAACAGAAGGTCCTA CATCAAAACCCTGGACCTTTAACCAAAATGATTATTACTTAACCTGTTTCTTCTTTTTCT CAAATCACGCATGATTTTGTCCAAAAACATTTTGCTGTTTTTCTTAGTGCTAATACCTTG CCTCTTATTCCTGCTGCATACAGCAGAGGTGATGATGTTGGCATTTGGATTAAATAAATA TTGTGCCTTAGGAGACTGGAAATTTTTAAATGTACAAGTCCTTTCAGTGATGAGGGAATT GATAAAAAAGGAAATCTTTTTCCTACGAAGCCAAAATGTTTGTTTTTGCAATTCTGAAAT GTGTTGTGACAACAATGACCTATTTATGATCTTAAATCTTTTTTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 448-1765, + strand, RNAz p=0.719039 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 448-1765, + strand, RNAz p=0.719039 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 2-201, gnl|bosTau2|chr28 (22249403-22249602) | |
| 2-201, gnl|Hg17|chr10 (74481016-74480817) | |
| 2-201, gnl|Mm7|chr10 (58868596-58868795) | |
| 448-558, gnl|bosTau2|chr28 (22273890-22274000) | |
| 448-558, gnl|canFam2|chr4 (26829888-26830022) | |
| 448-558, gnl|danRer3|chr17 (22412557-22412425) | |
| 448-558, gnl|echTel1|scaffold_231783 (3854-3993) | |
| 448-558, gnl|fr1|chrUn (104233388-104233270) | |
| 448-558, gnl|galGal2|chr6 (10489084-10488961) | |
| 448-558, gnl|hg17|chr10 (74460014-74460151) | |
| 448-558, gnl|Hg17|chr10 (74460136-74460026) | |
| 448-558, gnl|loxAfr1|scaffold_34984 (8309-8160) | |
| 448-558, gnl|mm7|chr10 (58880175-58880043) | |
| 448-558, gnl|Mm7|chr10 (58880054-58880164) | |
| 448-558, gnl|oryCun1|scaffold_214807 (44787-44932) | |
| 448-558, gnl|panTro1|chr8_random (39916900-39917037) | |
| 448-558, gnl|rheMac2|chr9 (63922540-63922403) | |
| 448-558, gnl|rn3|chrUn (15084465-15084597) | |
| 448-558, gnl|tetNig1|chrUn_random (9713959-9713845) | |
| 808-1314, gnl|bosTau2|chr28 (22289645-22290144) | |
| 808-1314, gnl|canFam2|chr4 (26812393-26812902) | |
| 808-1314, gnl|dasNov1|scaffold_4831 (26730-27318) | |
| 808-1314, gnl|echTel1|scaffold_317466 (76546-77184) | |
| 808-1314, gnl|galGal2|chr6 (10494353-10493794) | |
| 808-1314, gnl|hg17|chr10 (74437372-74437938) | |
| 808-1314, gnl|Hg17|chr10 (74438045-74437608) | |
| 808-1314, gnl|loxAfr1|scaffold_7466 (64698-64093) | |
| 808-1314, gnl|mm7|chr10 (58889838-58889312) | |
| 808-1314, gnl|monDom2|scaffold_14 (1071185-1071729) | |
| 808-1314, gnl|oryCun1|scaffold_214807 (11072-11597) | |
| 808-1314, gnl|panTro1|chr8_random (39894418-39894958) | |
| 808-1314, gnl|rheMac2|chr9 (63943319-63942757) | |
| 808-1314, gnl|rn3|chrUn (15074712-15075225) | |
| 1315-1908, gnl|bosTau2|chr28 (22290170-22290764) | |
| 1315-1908, gnl|Hg17|chr10 (74437583-74436985) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-201, gnl|bosTau2|chr28 (22249403-22249602) | |
| 2-201, gnl|Hg17|chr10 (74481016-74480817) | |
| 2-201, gnl|Mm7|chr10 (58868596-58868795) | |
| 448-558, gnl|bosTau2|chr28 (22273890-22274000) | |
| 448-558, gnl|canFam2|chr4 (26829888-26830022) | |
| 448-558, gnl|danRer3|chr17 (22412557-22412425) | |
| 448-558, gnl|echTel1|scaffold_231783 (3854-3993) | |
| 448-558, gnl|fr1|chrUn (104233388-104233270) | |
| 448-558, gnl|galGal2|chr6 (10489084-10488961) | |
| 448-558, gnl|hg17|chr10 (74460014-74460151) | |
| 448-558, gnl|Hg17|chr10 (74460136-74460026) | |
| 448-558, gnl|loxAfr1|scaffold_34984 (8309-8160) | |
| 448-558, gnl|mm7|chr10 (58880175-58880043) | |
| 448-558, gnl|Mm7|chr10 (58880054-58880164) | |
| 448-558, gnl|oryCun1|scaffold_214807 (44787-44932) | |
| 448-558, gnl|panTro1|chr8_random (39916900-39917037) | |
| 448-558, gnl|rheMac2|chr9 (63922540-63922403) | |
| 448-558, gnl|rn3|chrUn (15084465-15084597) | |
| 448-558, gnl|tetNig1|chrUn_random (9713959-9713845) | |
| 808-1314, gnl|bosTau2|chr28 (22289645-22290144) | |
| 808-1314, gnl|canFam2|chr4 (26812393-26812902) | |
| 808-1314, gnl|dasNov1|scaffold_4831 (26730-27318) | |
| 808-1314, gnl|echTel1|scaffold_317466 (76546-77184) | |
| 808-1314, gnl|galGal2|chr6 (10494353-10493794) | |
| 808-1314, gnl|hg17|chr10 (74437372-74437938) | |
| 808-1314, gnl|Hg17|chr10 (74438045-74437608) | |
| 808-1314, gnl|loxAfr1|scaffold_7466 (64698-64093) | |
| 808-1314, gnl|mm7|chr10 (58889838-58889312) | |
| 808-1314, gnl|monDom2|scaffold_14 (1071185-1071729) | |
| 808-1314, gnl|oryCun1|scaffold_214807 (11072-11597) | |
| 808-1314, gnl|panTro1|chr8_random (39894418-39894958) | |
| 808-1314, gnl|rheMac2|chr9 (63943319-63942757) | |
| 808-1314, gnl|rn3|chrUn (15074712-15075225) | |
| 1315-1908, gnl|bosTau2|chr28 (22290170-22290764) | |
| 1315-1908, gnl|Hg17|chr10 (74437583-74436985) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| aor (0.781097) | |
| bfe (0.749288) | |
| tbr (0.616713) | |
| liv (0.585137) | |
| ova (0.516529) | |
| spl (0.429553) | |
| fco (0.314416) | |
| sme (0.305437) | |
| isp (0.300752) | |
| lin (0.291206) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| sug (0.254582) | |
| eru (0.240096) | |
| cbl (0.229595) | |
| jca (0.22792) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| rec (0.17307) | |
| fat (0.147427) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| clu (0.119646) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.781097) | |
| bfe (0.749288) | |
| tbr (0.616713) | |
| liv (0.585137) | |
| ova (0.516529) | |
| spl (0.429553) | |
| fco (0.314416) | |
| sme (0.305437) | |
| isp (0.300752) | |
| lin (0.291206) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| sug (0.254582) | |
| eru (0.240096) | |
| cbl (0.229595) | |
| jca (0.22792) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| rec (0.17307) | |
| fat (0.147427) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| clu (0.119646) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |