Non-Coding RNA Search

Ss1.1-rnca08b_d7.5

Sequence:


               
               CAGAAGCCGCCAGGGTCTCCTCTGAGTTTCTCTGTCTTCTAGGTTCGCGTTCGTTGCGCA
GTTACGATGCCTCGTGGAAGCCGAAGCCGCACTTCCCGCATGGCCCCTCCGGCTAGCCGG
GCACCTCAGATGAGAGCTGCACCCAGGCCAGCGCCGGCAGCTCAGCCACCAGCAGCAGCT
CCACCATCTGCTGTTGGCTCCCCTGCTGCTGCACCTCGGCAGCCAGGTCTCATGGCCCAG
ATGGCAACCACTGCAGCCGGCGTGGCTGTGGGTTCTGCCGTCGGCCACACGATAGGTCAT
GCGATCACTGGGGGCTTCGGTGGAGGAAGTAGTGCTGAGCCCTCAAGGCCTGACATCACT
TACCAGGAGCCTCAGGGAGCCCAGCCAGCACAGCAGCAGCAGATGGCCCCATGCTTCTAT
GAGGTGAAACAGTTTTTGGAGTGTGCCCAGAACCAGGGTGACCTTAAGCTTTGTGAGGGT
TTCAGCGAGGTGCTGAAACAATGCAGACTGGCAAATGGATTATCTTAATCAAGAAGCTCC
ACTGAAGACATGAAAAATCACCCTCCATGACCTGGTTGATTTAGCATAAAAATGTGATTG
ATCATGAAGATATAAAGTGTGAAATCAAGATTAAACCTCTCCTCTATCACTAATAGCTTT
CGTGCTTCAGAATTGCAGTGGAGGAGGGTATTCTTCTGATGTGGAAGCTCATTGAGTATT
GAGTTTGGAGCTGGGCAGATGTTTATGTGGCCTCTGAAACATGCTTTTCTGATGTTATTG
ATTGTGAATTAATTAGAATAAAGAGATTTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGCCGCCAGGGTCTCCTCTGAGTTTCTCTGTCTTCTAGGTTCGCGTTCGTTGCGCA
GTTACGATGCCTCGTGGAAGCCGAAGCCGCACTTCCCGCATGGCCCCTCCGGCTAGCCGG
GCACCTCAGATGAGAGCTGCACCCAGGCCAGCGCCGGCAGCTCAGCCACCAGCAGCAGCT
CCACCATCTGCTGTTGGCTCCCCTGCTGCTGCACCTCGGCAGCCAGGTCTCATGGCCCAG
ATGGCAACCACTGCAGCCGGCGTGGCTGTGGGTTCTGCCGTCGGCCACACGATAGGTCAT
GCGATCACTGGGGGCTTCGGTGGAGGAAGTAGTGCTGAGCCCTCAAGGCCTGACATCACT
TACCAGGAGCCTCAGGGAGCCCAGCCAGCACAGCAGCAGCAGATGGCCCCATGCTTCTAT
GAGGTGAAACAGTTTTTGGAGTGTGCCCAGAACCAGGGTGACCTTAAGCTTTGTGAGGGT
TTCAGCGAGGTGCTGAAACAATGCAGACTGGCAAATGGATTATCTTAATCAAGAAGCTCC
ACTGAAGACATGAAAAATCACCCTCCATGACCTGGTTGATTTAGCATAAAAATGTGATTG
ATCATGAAGATATAAAGTGTGAAATCAAGATTAAACCTCTCCTCTATCACTAATAGCTTT
CGTGCTTCAGAATTGCAGTGGAGGAGGGTATTCTTCTGATGTGGAAGCTCATTGAGTATT
GAGTTTGGAGCTGGGCAGATGTTTATGTGGCCTCTGAAACATGCTTTTCTGATGTTATTG
ATTGTGAATTAATTAGAATAAAGAGATTTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CHCH2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CHCH2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               114-276, - strand, RNAz p=0.998616

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-276, - strand, RNAz p=0.998616

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-832, gnl|bosTau2|chr19 (43438491-43439326)
               

               
               1-832, gnl|Hg17|chr1 (15676381-15677126)
               

               
               1-832, gnl|Mm7|chr4 (34624439-34625194)
               


               
               38-615, gnl|bosTau2|chr11 (24101877-24102427)
               

               
               38-615, gnl|Hg17|chr19 (39309689-39310258)
               

               
               38-615, gnl|Mm7|chr4 (147058043-147057535)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-832, gnl|bosTau2|chr19 (43438491-43439326)
               

               
               1-832, gnl|Hg17|chr1 (15676381-15677126)
               

               
               1-832, gnl|Mm7|chr4 (34624439-34625194)
               


               
               38-615, gnl|bosTau2|chr11 (24101877-24102427)
               

               
               38-615, gnl|Hg17|chr19 (39309689-39310258)
               

               
               38-615, gnl|Mm7|chr4 (147058043-147057535)

Expressed library(ies): 91 entry(ies)

More info

Expressed library(ies): 91 entry(ies)

Help | Less info


               
               cki (3.30469)
               

               
               cje (2.80899)
               

               
               cst (2.38062)
               

               
               elu (2.31214)
               

               
               ldo (2.03706)
               

               
               sme (1.83262)
               

               
               ste (1.75771)
               

               
               cut (1.69924)
               

               
               sug (1.65479)
               

               
               hea (1.43149)
               

               
               che (1.36314)
               

               
               cbe (1.19617)
               

               
               med (1.16252)
               

               
               bla (1.11912)
               

               
               fce (1.08637)
               

               
               ssp (1.08416)
               

               
               sto (1.07894)
               

               
               vin (0.997672)
               

               
               csk (0.985222)
               

               
               aor (0.976372)
               

               
               col (0.975039)
               

               
               pgl (0.947867)
               

               
               bfe (0.899146)
               

               
               eje (0.889504)
               

               
               ton (0.877501)
               

               
               nms (0.855432)
               

               
               mcp (0.853242)
               

               
               nco (0.808669)
               

               
               spc (0.793561)
               

               
               tbr (0.770891)
               

               
               lun (0.752445)
               

               
               sag (0.730861)
               

               
               spl (0.715922)
               

               
               ill (0.702371)
               

               
               kid (0.648677)
               

               
               ova (0.645661)
               

               
               ret (0.643666)
               

               
               tes (0.623441)
               

               
               fli (0.608643)
               

               
               cly (0.603209)
               

               
               fat (0.58971)
               

               
               lin (0.582411)
               

               
               nlu (0.575043)
               

               
               jca (0.569801)
               

               
               cmu (0.55918)
               

               
               hlv (0.557025)
               

               
               pla (0.534688)
               

               
               gul (0.532765)
               

               
               fbs (0.526039)
               

               
               sin (0.524843)
               

               
               rec (0.519211)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               eye (0.511509)
               

               
               nje (0.49776)
               

               
               mga (0.480615)
               

               
               cli (0.458435)
               

               
               cag (0.453583)
               

               
               isp (0.451128)
               

               
               hyp (0.42851)
               

               
               pty (0.428143)
               

               
               nca (0.410621)
               

               
               lyg (0.399308)
               

               
               ute (0.398353)
               

               
               jej (0.395687)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               ecc (0.345105)
               

               
               csp (0.322373)
               

               
               eli (0.303628)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               cbr (0.255951)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               ctl (0.153069)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)

Expressed library(ies): 91 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (3.30469)
               

               
               cje (2.80899)
               

               
               cst (2.38062)
               

               
               elu (2.31214)
               

               
               ldo (2.03706)
               

               
               sme (1.83262)
               

               
               ste (1.75771)
               

               
               cut (1.69924)
               

               
               sug (1.65479)
               

               
               hea (1.43149)
               

               
               che (1.36314)
               

               
               cbe (1.19617)
               

               
               med (1.16252)
               

               
               bla (1.11912)
               

               
               fce (1.08637)
               

               
               ssp (1.08416)
               

               
               sto (1.07894)
               

               
               vin (0.997672)
               

               
               csk (0.985222)
               

               
               aor (0.976372)
               

               
               col (0.975039)
               

               
               pgl (0.947867)
               

               
               bfe (0.899146)
               

               
               eje (0.889504)
               

               
               ton (0.877501)
               

               
               nms (0.855432)
               

               
               mcp (0.853242)
               

               
               nco (0.808669)
               

               
               spc (0.793561)
               

               
               tbr (0.770891)
               

               
               lun (0.752445)
               

               
               sag (0.730861)
               

               
               spl (0.715922)
               

               
               ill (0.702371)
               

               
               kid (0.648677)
               

               
               ova (0.645661)
               

               
               ret (0.643666)
               

               
               tes (0.623441)
               

               
               fli (0.608643)
               

               
               cly (0.603209)
               

               
               fat (0.58971)
               

               
               lin (0.582411)
               

               
               nlu (0.575043)
               

               
               jca (0.569801)
               

               
               cmu (0.55918)
               

               
               hlv (0.557025)
               

               
               pla (0.534688)
               

               
               gul (0.532765)
               

               
               fbs (0.526039)
               

               
               sin (0.524843)
               

               
               rec (0.519211)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               eye (0.511509)
               

               
               nje (0.49776)
               

               
               mga (0.480615)
               

               
               cli (0.458435)
               

               
               cag (0.453583)
               

               
               isp (0.451128)
               

               
               hyp (0.42851)
               

               
               pty (0.428143)
               

               
               nca (0.410621)
               

               
               lyg (0.399308)
               

               
               ute (0.398353)
               

               
               jej (0.395687)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               ecc (0.345105)
               

               
               csp (0.322373)
               

               
               eli (0.303628)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               cbr (0.255951)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               ctl (0.153069)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)

	1-832, gnl\|bosTau2\|chr19 (43438491-43439326)
	1-832, gnl\|Hg17\|chr1 (15676381-15677126)
	1-832, gnl\|Mm7\|chr4 (34624439-34625194)

	38-615, gnl\|bosTau2\|chr11 (24101877-24102427)
	38-615, gnl\|Hg17\|chr19 (39309689-39310258)
	38-615, gnl\|Mm7\|chr4 (147058043-147057535)

	cki (3.30469)
	cje (2.80899)
	cst (2.38062)
	elu (2.31214)
	ldo (2.03706)
	sme (1.83262)
	ste (1.75771)
	cut (1.69924)
	sug (1.65479)
	hea (1.43149)
	che (1.36314)
	cbe (1.19617)
	med (1.16252)
	bla (1.11912)
	fce (1.08637)
	ssp (1.08416)
	sto (1.07894)
	vin (0.997672)
	csk (0.985222)
	aor (0.976372)
	col (0.975039)
	pgl (0.947867)
	bfe (0.899146)
	eje (0.889504)
	ton (0.877501)
	nms (0.855432)
	mcp (0.853242)
	nco (0.808669)
	spc (0.793561)
	tbr (0.770891)
	lun (0.752445)
	sag (0.730861)
	spl (0.715922)
	ill (0.702371)
	kid (0.648677)
	ova (0.645661)
	ret (0.643666)
	tes (0.623441)
	fli (0.608643)
	cly (0.603209)
	fat (0.58971)
	lin (0.582411)
	nlu (0.575043)
	jca (0.569801)
	cmu (0.55918)
	hlv (0.557025)
	pla (0.534688)
	gul (0.532765)
	fbs (0.526039)
	sin (0.524843)
	rec (0.519211)
	duo (0.518403)
	pro (0.512033)
	eye (0.511509)
	nje (0.49776)
	mga (0.480615)
	cli (0.458435)
	cag (0.453583)
	isp (0.451128)
	hyp (0.42851)
	pty (0.428143)
	nca (0.410621)
	lyg (0.399308)
	ute (0.398353)
	jej (0.395687)
	thg (0.380373)
	tra (0.369276)
	ecc (0.345105)
	csp (0.322373)
	eli (0.303628)
	cte (0.29274)
	liv (0.292569)
	nmm (0.265604)
	cov (0.264306)
	cbr (0.255951)
	ese (0.253004)
	eep (0.245128)
	eru (0.240096)
	ebs (0.236602)
	pan (0.23596)
	cbl (0.229595)
	mas (0.210305)
	cty (0.20816)
	fcc (0.197785)
	nep (0.183925)
	mgm (0.180343)
	fty (0.17584)
	fhi (0.169578)
	ctl (0.153069)
	ski (0.146735)
	lnt (0.142308)