Non-Coding RNA Search

Ss1.1-rnca08b_n10.5

Sequence:


               
               TCACAGCGTCAGTATAAAGGAATGTTTGATGCACTTGTGAAAATATATAAGTATGAAGGT
GTGCGTGGATTATATAAGGGCTTTATTCCTGGGCTGTTTGGAACATCACACGGTGCCCTT
CAGTTTATGACATATGAATTGTTGAAGTTGAAGTACAACCAGCATATCAATAGATTACCA
GAAGCACAATTGAACACAGTAGAATATATATCTGTTGCAGCACTATCTAAAATATTCGCT
GTGGCAGCAACATACCCATACCAAGTTGTAAGAGCTCGTCTGCAGGATCAACACATGTTT
TACAGTGGTGTATTGGATGTAATCACAAAGACGTGGAGGAAAGAAGGTATCAGTGGATTT
TACAAAGGAATTGCCCCTAATCTGATTAGAGTGACTCCAGCCTGCTGTATTACTTTTGTG
GTATATGAAAATGTCTCACATTTCTTACTTGGCCTTAAAGAAAAGAAAAAGTAAGCTTAA
AAGAAGATAATTCCAGTCATCTGCCCGAGGTAGCAACATGCTCCTTTGTATTTGAGAAGT
AAAAACTCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACAGCGTCAGTATAAAGGAATGTTTGATGCACTTGTGAAAATATATAAGTATGAAGGT
GTGCGTGGATTATATAAGGGCTTTATTCCTGGGCTGTTTGGAACATCACACGGTGCCCTT
CAGTTTATGACATATGAATTGTTGAAGTTGAAGTACAACCAGCATATCAATAGATTACCA
GAAGCACAATTGAACACAGTAGAATATATATCTGTTGCAGCACTATCTAAAATATTCGCT
GTGGCAGCAACATACCCATACCAAGTTGTAAGAGCTCGTCTGCAGGATCAACACATGTTT
TACAGTGGTGTATTGGATGTAATCACAAAGACGTGGAGGAAAGAAGGTATCAGTGGATTT
TACAAAGGAATTGCCCCTAATCTGATTAGAGTGACTCCAGCCTGCTGTATTACTTTTGTG
GTATATGAAAATGTCTCACATTTCTTACTTGGCCTTAAAGAAAAGAAAAAGTAAGCTTAA
AAGAAGATAATTCCAGTCATCTGCCCGAGGTAGCAACATGCTCCTTTGTATTTGAGAAGT
AAAAACTCCGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9651152|dbj|BAB03581.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9651152|dbj|BAB03581.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               77-192, gnl|bosTau2|chr14 (36283412-36283297)
               

               
               77-192, gnl|Hg17|chr8 (104483460-104483345)
               

               
               77-192, gnl|Mm7|chr15 (39103623-39103508)
               


               
               337-552, gnl|bosTau2|chr14 (36281272-36281065)
               

               
               337-552, gnl|Hg17|chr8 (104481952-104481742)
               

               
               337-552, gnl|Mm7|chr15 (39101489-39101280)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-192, gnl|bosTau2|chr14 (36283412-36283297)
               

               
               77-192, gnl|Hg17|chr8 (104483460-104483345)
               

               
               77-192, gnl|Mm7|chr15 (39103623-39103508)
               


               
               337-552, gnl|bosTau2|chr14 (36281272-36281065)
               

               
               337-552, gnl|Hg17|chr8 (104481952-104481742)
               

               
               337-552, gnl|Mm7|chr15 (39101489-39101280)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fat (0.147427)
               

               
               nca (0.136874)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               cbl (0.114797)

	77-192, gnl\|bosTau2\|chr14 (36283412-36283297)
	77-192, gnl\|Hg17\|chr8 (104483460-104483345)
	77-192, gnl\|Mm7\|chr15 (39103623-39103508)

	337-552, gnl\|bosTau2\|chr14 (36281272-36281065)
	337-552, gnl\|Hg17\|chr8 (104481952-104481742)
	337-552, gnl\|Mm7\|chr15 (39101489-39101280)