Non-Coding RNA Search

Ss1.1-rnca09b_a8.5

Sequence:


               
               GGCTCCTGGGCTTGGACAGAGTGCAGGAAGATGGCGGACCAAATGTCGCAGATGGAATGC
AGCATAGAAACCATTATCAACATCTTCCACCAGTACTCGGTGCGGCTGGGGAACCGGGAC
ACCCTGAACCAGAAAGAATTCAAACAGCTGGTGAAAAAAGAGCTGCCAAACTTTCTCAAG
AAGCAGAAGAGGGATGAGAAAGCCATAAACCACATCCTGGAAGACCTGGACACTAATGTG
GACAAGCAGCTGAGCTTCGAGGAGTTCTCCATGCTGGTGGCCAAGCTGACGGTAGCTTCT
CACGAGGAGATGCACAAGACCGCCCCCCCGGGAGACGGCCACCACCACGGGCCAGGCTTC
GGGAGCAGCAGCTCAGGCCCATGTGCCGGCCAGGAGAGCCAGACCCCCGGGGGCCACGGC
CACGGCCACAGCCATGGCGGTCACGGCCATGGCCACAGCCACTAATCAGGAGGCCAGGCC
ATGCACCCCTGTCCACCTTGGGCCACGAGGCTGCCGTGCCGCTTTGCCTTCGCTGCAGGG
CAGGGGGCTGGGGGCGAAATAAAGTCTCCCTCTGAGCCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCCTGGGCTTGGACAGAGTGCAGGAAGATGGCGGACCAAATGTCGCAGATGGAATGC
AGCATAGAAACCATTATCAACATCTTCCACCAGTACTCGGTGCGGCTGGGGAACCGGGAC
ACCCTGAACCAGAAAGAATTCAAACAGCTGGTGAAAAAAGAGCTGCCAAACTTTCTCAAG
AAGCAGAAGAGGGATGAGAAAGCCATAAACCACATCCTGGAAGACCTGGACACTAATGTG
GACAAGCAGCTGAGCTTCGAGGAGTTCTCCATGCTGGTGGCCAAGCTGACGGTAGCTTCT
CACGAGGAGATGCACAAGACCGCCCCCCCGGGAGACGGCCACCACCACGGGCCAGGCTTC
GGGAGCAGCAGCTCAGGCCCATGTGCCGGCCAGGAGAGCCAGACCCCCGGGGGCCACGGC
CACGGCCACAGCCATGGCGGTCACGGCCATGGCCACAGCCACTAATCAGGAGGCCAGGCC
ATGCACCCCTGTCCACCTTGGGCCACGAGGCTGCCGTGCCGCTTTGCCTTCGCTGCAGGG
CAGGGGGCTGGGGGCGAAATAAAGTCTCCCTCTGAGCCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877405|ref|XP_611685.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877405|ref|XP_611685.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               338-523, - strand, RNAz p=0.999997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-523, - strand, RNAz p=0.999997

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               179-579, gnl|bosTau2|chr3 (2415595-2415180)
               

               
               179-579, gnl|Hg17|chr1 (150146191-150146576)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-579, gnl|bosTau2|chr3 (2415595-2415180)
               

               
               179-579, gnl|Hg17|chr1 (150146191-150146576)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ton (7.02001)
               

               
               nbm (3.57569)
               

               
               nlu (2.10849)
               

               
               nca (1.09499)
               

               
               fli (0.405762)
               

               
               eli (0.303628)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (7.02001)
               

               
               nbm (3.57569)
               

               
               nlu (2.10849)
               

               
               nca (1.09499)
               

               
               fli (0.405762)
               

               
               eli (0.303628)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	179-579, gnl\|bosTau2\|chr3 (2415595-2415180)
	179-579, gnl\|Hg17\|chr1 (150146191-150146576)

	ton (7.02001)
	nbm (3.57569)
	nlu (2.10849)
	nca (1.09499)
	fli (0.405762)
	eli (0.303628)
	pla (0.267344)
	fty (0.17584)
	cly (0.120642)
	med (0.116252)