Non-Coding RNA Search

Ss1.1-rnca11b_l7.5

Sequence:


               
               GACAGACGCTTCGCTGGCCCCTCCCTTCCCATGGCCTAGCTGCGGAGGGCTCGCACCAGC
CCGGGTCTCAAAGGCTAAGGACCTGAGGGTTCTGCCTAGAGAACAGCTCTTACTGGCCCA
GAGTGCCTTGGCTGAGGCCAGAAGCACTTCCGCCCTGGCTGCCTCTTACTGGCCAGGGCC
TGGCGCCTCTGGCTGGAGGCTTCCTTCCACCACCCTAGCCAGAGGCTGCTTCCACAGCTG
AGCTCCAGGGCATCTGGTTGACCAGAGCCTGGGGAGGAGGGCTGGTCTCTGCTCCTCATG
GGGTTTGGCTGTCCCCCCCTTCCCCCAACATGCTCTCCCAGCCCCAGCCTCCCCAGCCCT
GACCCCTCAGCTGTCGAGCTGGTTTTGATGGCCTCCCACCACCCCACACGCCTGGGAATC
CTAGGGGCGACTCCAGTGGCCTGAGGAGACATATTTATAGGCCCCCGGCAGGGCTGCTCC
CACCCCATCCGGGTGCCCCAGGATGGGCTTCTCCCGGCCGGGGCTTGGCCAAAGCTTACT
TAATAAAGTGCCTTTCCCCACTGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGACGCTTCGCTGGCCCCTCCCTTCCCATGGCCTAGCTGCGGAGGGCTCGCACCAGC
CCGGGTCTCAAAGGCTAAGGACCTGAGGGTTCTGCCTAGAGAACAGCTCTTACTGGCCCA
GAGTGCCTTGGCTGAGGCCAGAAGCACTTCCGCCCTGGCTGCCTCTTACTGGCCAGGGCC
TGGCGCCTCTGGCTGGAGGCTTCCTTCCACCACCCTAGCCAGAGGCTGCTTCCACAGCTG
AGCTCCAGGGCATCTGGTTGACCAGAGCCTGGGGAGGAGGGCTGGTCTCTGCTCCTCATG
GGGTTTGGCTGTCCCCCCCTTCCCCCAACATGCTCTCCCAGCCCCAGCCTCCCCAGCCCT
GACCCCTCAGCTGTCGAGCTGGTTTTGATGGCCTCCCACCACCCCACACGCCTGGGAATC
CTAGGGGCGACTCCAGTGGCCTGAGGAGACATATTTATAGGCCCCCGGCAGGGCTGCTCC
CACCCCATCCGGGTGCCCCAGGATGGGCTTCTCCCGGCCGGGGCTTGGCCAAAGCTTACT
TAATAAAGTGCCTTTCCCCACTGAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               129-317, + strand, RNAz p=0.999973
               

               
               147-317, - strand, RNAz p=0.995053

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-317, + strand, RNAz p=0.999973
               

               
               147-317, - strand, RNAz p=0.995053

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               136-196, + strand, RNAmicro p=0.954305
               

               
               200-294, + strand, RNAmicro p=0.945399

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               136-196, + strand, RNAmicro p=0.954305
               

               
               200-294, + strand, RNAmicro p=0.945399

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               129-317, CR851271 Normalized and Subtracted bovine endometrium tissues 
(emb|CR851271.2|), blast E-value=1e-33, identity=86.39% 
               

               
               129-317, CR852011 Normalized and Subtracted bovine endometrium tissues 
(emb|CR852011.2|), blast E-value=1e-33, identity=86.39% 
               

               
               129-317, 1269708 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN525123.1|), 
blast E-value=1e-33, identity=86.39% 
               

               
               129-317, 1271826 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN527012.1|), 
blast E-value=1e-33, identity=86.39% 
               

               
               129-317, LB0176.CR_I13 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV820564.1|), 
blast E-value=1e-33, identity=86.39% 
               

               
               129-317, LB03064.CR_P19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE381463.1|), 
blast E-value=1e-33, identity=86.39%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               129-317, CR851271 Normalized and Subtracted bovine endometrium tissues 
(emb|CR851271.2|), blast E-value=1e-33, identity=86.39% 
               

               
               129-317, CR852011 Normalized and Subtracted bovine endometrium tissues 
(emb|CR852011.2|), blast E-value=1e-33, identity=86.39% 
               

               
               129-317, 1269708 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN525123.1|), 
blast E-value=1e-33, identity=86.39% 
               

               
               129-317, 1271826 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN527012.1|), 
blast E-value=1e-33, identity=86.39% 
               

               
               129-317, LB0176.CR_I13 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV820564.1|), 
blast E-value=1e-33, identity=86.39% 
               

               
               129-317, LB03064.CR_P19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE381463.1|), 
blast E-value=1e-33, identity=86.39%

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AB024433, +
               

               
               5' of AB024433, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB024433, +
               

               
               5' of AB024433, -

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               129-317, gnl|bosTau2|chr17 (44493939-44493751)
               

               
               129-317, gnl|canFam2|chr26 (33297949-33298555)
               

               
               129-317, gnl|hg17|chr22 (19103253-19103866)
               

               
               129-317, gnl|Hg17|chr22 (19103855-19103658)
               

               
               129-317, gnl|mm7|chr16 (17358172-17357608)
               

               
               129-317, gnl|Mm7|chr16 (17357617-17357820)
               

               
               129-317, gnl|oryCun1|scaffold_194895 (6630-6011)
               

               
               129-317, gnl|panTro1|chr23 (19076673-19077284)
               

               
               129-317, gnl|rheMac2|chr10 (64515708-64516323)
               

               
               129-317, gnl|rn3|chr11 (85204798-85205366)
               

               
               129-317, gnl|xenTro1|scaffold_3442 (12126-12696)
               


               
               342-559, gnl|bosTau2|chr17 (44493754-44493534)
               

               
               342-559, gnl|canFam2|chr26 (33297949-33298555)
               

               
               342-559, gnl|hg17|chr22 (19103253-19103866)
               

               
               342-559, gnl|Hg17|chr22 (19103661-19103432)
               

               
               342-559, gnl|mm7|chr16 (17358172-17357608)
               

               
               342-559, gnl|Mm7|chr16 (17357817-17358025)
               

               
               342-559, gnl|oryCun1|scaffold_194895 (6630-6011)
               

               
               342-559, gnl|panTro1|chr23 (19076673-19077284)
               

               
               342-559, gnl|rheMac2|chr10 (64515708-64516323)
               

               
               342-559, gnl|rn3|chr11 (85204798-85205366)
               

               
               342-559, gnl|xenTro1|scaffold_3442 (12126-12696)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-317, gnl|bosTau2|chr17 (44493939-44493751)
               

               
               129-317, gnl|canFam2|chr26 (33297949-33298555)
               

               
               129-317, gnl|hg17|chr22 (19103253-19103866)
               

               
               129-317, gnl|Hg17|chr22 (19103855-19103658)
               

               
               129-317, gnl|mm7|chr16 (17358172-17357608)
               

               
               129-317, gnl|Mm7|chr16 (17357617-17357820)
               

               
               129-317, gnl|oryCun1|scaffold_194895 (6630-6011)
               

               
               129-317, gnl|panTro1|chr23 (19076673-19077284)
               

               
               129-317, gnl|rheMac2|chr10 (64515708-64516323)
               

               
               129-317, gnl|rn3|chr11 (85204798-85205366)
               

               
               129-317, gnl|xenTro1|scaffold_3442 (12126-12696)
               


               
               342-559, gnl|bosTau2|chr17 (44493754-44493534)
               

               
               342-559, gnl|canFam2|chr26 (33297949-33298555)
               

               
               342-559, gnl|hg17|chr22 (19103253-19103866)
               

               
               342-559, gnl|Hg17|chr22 (19103661-19103432)
               

               
               342-559, gnl|mm7|chr16 (17358172-17357608)
               

               
               342-559, gnl|Mm7|chr16 (17357817-17358025)
               

               
               342-559, gnl|oryCun1|scaffold_194895 (6630-6011)
               

               
               342-559, gnl|panTro1|chr23 (19076673-19077284)
               

               
               342-559, gnl|rheMac2|chr10 (64515708-64516323)
               

               
               342-559, gnl|rn3|chr11 (85204798-85205366)
               

               
               342-559, gnl|xenTro1|scaffold_3442 (12126-12696)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               pla (0.133672)

	129-317, + strand, RNAz p=0.999973
	147-317, - strand, RNAz p=0.995053

	136-196, + strand, RNAmicro p=0.954305
	200-294, + strand, RNAmicro p=0.945399

	129-317, CR851271 Normalized and Subtracted bovine endometrium tissues (emb\|CR851271.2\|), blast E-value=1e-33, identity=86.39%
	129-317, CR852011 Normalized and Subtracted bovine endometrium tissues (emb\|CR852011.2\|), blast E-value=1e-33, identity=86.39%
	129-317, 1269708 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN525123.1\|), blast E-value=1e-33, identity=86.39%
	129-317, 1271826 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN527012.1\|), blast E-value=1e-33, identity=86.39%
	129-317, LB0176.CR_I13 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV820564.1\|), blast E-value=1e-33, identity=86.39%
	129-317, LB03064.CR_P19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE381463.1\|), blast E-value=1e-33, identity=86.39%

	129-317, gnl\|bosTau2\|chr17 (44493939-44493751)
	129-317, gnl\|canFam2\|chr26 (33297949-33298555)
	129-317, gnl\|hg17\|chr22 (19103253-19103866)
	129-317, gnl\|Hg17\|chr22 (19103855-19103658)
	129-317, gnl\|mm7\|chr16 (17358172-17357608)
	129-317, gnl\|Mm7\|chr16 (17357617-17357820)
	129-317, gnl\|oryCun1\|scaffold_194895 (6630-6011)
	129-317, gnl\|panTro1\|chr23 (19076673-19077284)
	129-317, gnl\|rheMac2\|chr10 (64515708-64516323)
	129-317, gnl\|rn3\|chr11 (85204798-85205366)
	129-317, gnl\|xenTro1\|scaffold_3442 (12126-12696)

	342-559, gnl\|bosTau2\|chr17 (44493754-44493534)
	342-559, gnl\|canFam2\|chr26 (33297949-33298555)
	342-559, gnl\|hg17\|chr22 (19103253-19103866)
	342-559, gnl\|Hg17\|chr22 (19103661-19103432)
	342-559, gnl\|mm7\|chr16 (17358172-17357608)
	342-559, gnl\|Mm7\|chr16 (17357817-17358025)
	342-559, gnl\|oryCun1\|scaffold_194895 (6630-6011)
	342-559, gnl\|panTro1\|chr23 (19076673-19077284)
	342-559, gnl\|rheMac2\|chr10 (64515708-64516323)
	342-559, gnl\|rn3\|chr11 (85204798-85205366)
	342-559, gnl\|xenTro1\|scaffold_3442 (12126-12696)