Ss1.1-rnca12b_b10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAATTCCAATGATGTATTTGTCTTGAAACTGCAACAAAACAATGGCTACATCTGGATAG GAAAAGGTGCCAGCCAGGAGGAGGAGAAAGGAGCAGAGTATGTGGCAAGTGTCCTCAAAT GCAAAACCACAAGGATTCAGGAAGGCGAGGAACCAGAGGAGTTCTGGAATTCCCTTGGAG GGAAAAAAGACTACCAGACTTCTCCCCTGTTAGAAACCCAGGCTGAAGAGCATCTGCCTC GGCTTTATGGCTGCTCCAACAAAACTGGAAGATTCACTATTGAAGAGGTCCCAGGAGAGT TCACCCAGGATGACTTAGCAGAAGATGATGTCATGTTACTAGATGCTTGGGAACAGATTT TTATTTGGATTGGCAAAGATGCCAATGAAGTTGAGAGAGCAGAATCTCTGAAGTCTGCCA AAATGTACCTGGAGACAGACCCTTCTGGAAGAGATAAGAGGACGCCAATTGTCATTGTAA AACAAGGCCATGAGCCACCCACGTTCACAGGCTGGTTCTTGGGCTGGGATTCCAACAGGT GGTAAACGATTTTTATAGGATAAAACAAGCAAACATTATGGGGCAGCTGTCCCACTGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAATTCCAATGATGTATTTGTCTTGAAACTGCAACAAAACAATGGCTACATCTGGATAG GAAAAGGTGCCAGCCAGGAGGAGGAGAAAGGAGCAGAGTATGTGGCAAGTGTCCTCAAAT GCAAAACCACAAGGATTCAGGAAGGCGAGGAACCAGAGGAGTTCTGGAATTCCCTTGGAG GGAAAAAAGACTACCAGACTTCTCCCCTGTTAGAAACCCAGGCTGAAGAGCATCTGCCTC GGCTTTATGGCTGCTCCAACAAAACTGGAAGATTCACTATTGAAGAGGTCCCAGGAGAGT TCACCCAGGATGACTTAGCAGAAGATGATGTCATGTTACTAGATGCTTGGGAACAGATTT TTATTTGGATTGGCAAAGATGCCAATGAAGTTGAGAGAGCAGAATCTCTGAAGTCTGCCA AAATGTACCTGGAGACAGACCCTTCTGGAAGAGATAAGAGGACGCCAATTGTCATTGTAA AACAAGGCCATGAGCCACCCACGTTCACAGGCTGGTTCTTGGGCTGGGATTCCAACAGGT GGTAAACGATTTTTATAGGATAAAACAAGCAAACATTATGGGGCAGCTGTCCCACTGCTG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 477-594, + strand, RNAz p=0.708087 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 477-594, + strand, RNAz p=0.708087 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_033128, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-167, gnl|bosTau2|chr4 (5689325-5689159) | |
| 1-167, gnl|Hg17|chr7 (12457025-12457190) | |
| 1-167, gnl|Mm7|chr12 (37902765-37902600) | |
| 417-594, gnl|bosTau2|chr4 (5682922-5682747) | |
| 417-594, gnl|canFam2|chr14 (30424763-30424888) | |
| 417-594, gnl|danRer3|chr19 (44217211-44217346) | |
| 417-594, gnl|dasNov1|scaffold_50832 (4613-4488) | |
| 417-594, gnl|echTel1|scaffold_321469 (165833-165958) | |
| 417-594, gnl|fr1|chrUn (152112775-152112899) | |
| 417-594, gnl|galGal2|chr2 (26080666-26080791) | |
| 417-594, gnl|hg17|chr7 (12465444-12465569) | |
| 417-594, gnl|Hg17|chr7 (12465452-12465627) | |
| 417-594, gnl|loxAfr1|scaffold_88293 (7552-7677) | |
| 417-594, gnl|mm7|chr12 (37893969-37893844) | |
| 417-594, gnl|Mm7|chr12 (37893959-37893791) | |
| 417-594, gnl|monDom2|scaffold_102 (3023293-3023418) | |
| 417-594, gnl|oryCun1|scaffold_137625 (8853-8978) | |
| 417-594, gnl|panTro1|chr6 (13206147-13206272) | |
| 417-594, gnl|rheMac2|chr3 (113539573-113539448) | |
| 417-594, gnl|rn3|chr6 (59241193-59241069) | |
| 417-594, gnl|tetNig1|chr4 (6021648-6021751) | |
| 417-594, gnl|xenTro1|scaffold_730 (473103-473227) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-167, gnl|bosTau2|chr4 (5689325-5689159) | |
| 1-167, gnl|Hg17|chr7 (12457025-12457190) | |
| 1-167, gnl|Mm7|chr12 (37902765-37902600) | |
| 417-594, gnl|bosTau2|chr4 (5682922-5682747) | |
| 417-594, gnl|canFam2|chr14 (30424763-30424888) | |
| 417-594, gnl|danRer3|chr19 (44217211-44217346) | |
| 417-594, gnl|dasNov1|scaffold_50832 (4613-4488) | |
| 417-594, gnl|echTel1|scaffold_321469 (165833-165958) | |
| 417-594, gnl|fr1|chrUn (152112775-152112899) | |
| 417-594, gnl|galGal2|chr2 (26080666-26080791) | |
| 417-594, gnl|hg17|chr7 (12465444-12465569) | |
| 417-594, gnl|Hg17|chr7 (12465452-12465627) | |
| 417-594, gnl|loxAfr1|scaffold_88293 (7552-7677) | |
| 417-594, gnl|mm7|chr12 (37893969-37893844) | |
| 417-594, gnl|Mm7|chr12 (37893959-37893791) | |
| 417-594, gnl|monDom2|scaffold_102 (3023293-3023418) | |
| 417-594, gnl|oryCun1|scaffold_137625 (8853-8978) | |
| 417-594, gnl|panTro1|chr6 (13206147-13206272) | |
| 417-594, gnl|rheMac2|chr3 (113539573-113539448) | |
| 417-594, gnl|rn3|chr6 (59241193-59241069) | |
| 417-594, gnl|tetNig1|chr4 (6021648-6021751) | |
| 417-594, gnl|xenTro1|scaffold_730 (473103-473227) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| nca (0.136874) | |
| kid (0.129735) |