Non-Coding RNA Search

Ss1.1-rnca13b_g8.5

Sequence:


               
               CTTCTCTTTCTGCATTCTCATGTTTTTTCCTAAATGTTGTGGGTTTTTTTTTATTTTACT
TTTTCCTTAAAAAAAGTCCCCACCAAAAAAAAAAGATTGGATTTGGAGTAAAAATTTGGG
GAGGAAAACTTAACAGTTTACATTTTGACAATTACAGAAAAAAATCTCGGAGCCAACTAC
CTGGTGTTGAAGGTGGATTAAAGCTGGGATTTATGTGCTTGGTGAAATGTGGGATGCATA
AAAATCTGCCCCTGCCTAGCATGGCAAACTGCTCTCACCTCCTTGCAGCTCTCTTCTAGA
CTCCGCATGGCTGTCGTCCACCAAGTAAAGATGGCGGAGCGTGGTTACAGCTTTTCGCTG
ACTACATTCAGCCCATCTGGTAAACTTGTACAGATTGAATATGCTTTGGCTGCTGTAGCT
GGAGGAGCCCCTTCAGTGGGAATTAAAGCTGCAAATGGTGTGGTCTTAGCAACTGAGAAG
AAACAGAAATCCATCCTGTATGACGAGCGAAGTGTCCACAAAGTGGAGCCCATCACCAAG
CACATAGGTTTGGTGTATAGCGGCATGGGCCCAGACTACAGAGTGCTTGTGCACAGGGCT
CGAAAACTAGCTCAGCAATACTATCTCGTTTACCAAGAACCCATTCCCACAGCTCAGCTG
GTACAGAGAGTAGCTTCCGTGATGCAAGAATACACCCAGTCAGGTGGTGTTCGTCCATTT
GGAGTGTCTTTGCTTATTTGTGGTTGGAATGAGGGACGACCGTATTTATTTCAGTCAGAT
CCATCTGGAGCCTACTTTGCTTGGAAAGCCACTGCAATGGGAAAGAACTATGTGAATGGG
AAAACGTTCCTTGAGAAAAGATACAATGAAGATCTGGAACTTGAAGATGCCATTCACACA
GCCATATTAACCCTAAAGGAGAGCTTTGAAGGGCAAATGACAGAAGATAACATAGAAGTT
GGCATCTGCAATGAAGCCGGATTTAGGAGGCTTACTCCCACCGAAGTTAAGGATTACCTG
GCTGCCATTGCATAATAACGAAGTGACTGAAAATCCTGAATTTCAGATCTCTCTCTACTT
AAACATGTTTAAAGTATGTTTTGTTTTGCAGACTTTTTGCATACTTATTTCTACATGGTT
TAATGGACTGATGTTTTTAAAATGAGACTTATAAATCATAATAAACTGTTAAATTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACTTTTAACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCTTTCTGCATTCTCATGTTTTTTCCTAAATGTTGTGGGTTTTTTTTTATTTTACT
TTTTCCTTAAAAAAAGTCCCCACCAAAAAAAAAAGATTGGATTTGGAGTAAAAATTTGGG
GAGGAAAACTTAACAGTTTACATTTTGACAATTACAGAAAAAAATCTCGGAGCCAACTAC
CTGGTGTTGAAGGTGGATTAAAGCTGGGATTTATGTGCTTGGTGAAATGTGGGATGCATA
AAAATCTGCCCCTGCCTAGCATGGCAAACTGCTCTCACCTCCTTGCAGCTCTCTTCTAGA
CTCCGCATGGCTGTCGTCCACCAAGTAAAGATGGCGGAGCGTGGTTACAGCTTTTCGCTG
ACTACATTCAGCCCATCTGGTAAACTTGTACAGATTGAATATGCTTTGGCTGCTGTAGCT
GGAGGAGCCCCTTCAGTGGGAATTAAAGCTGCAAATGGTGTGGTCTTAGCAACTGAGAAG
AAACAGAAATCCATCCTGTATGACGAGCGAAGTGTCCACAAAGTGGAGCCCATCACCAAG
CACATAGGTTTGGTGTATAGCGGCATGGGCCCAGACTACAGAGTGCTTGTGCACAGGGCT
CGAAAACTAGCTCAGCAATACTATCTCGTTTACCAAGAACCCATTCCCACAGCTCAGCTG
GTACAGAGAGTAGCTTCCGTGATGCAAGAATACACCCAGTCAGGTGGTGTTCGTCCATTT
GGAGTGTCTTTGCTTATTTGTGGTTGGAATGAGGGACGACCGTATTTATTTCAGTCAGAT
CCATCTGGAGCCTACTTTGCTTGGAAAGCCACTGCAATGGGAAAGAACTATGTGAATGGG
AAAACGTTCCTTGAGAAAAGATACAATGAAGATCTGGAACTTGAAGATGCCATTCACACA
GCCATATTAACCCTAAAGGAGAGCTTTGAAGGGCAAATGACAGAAGATAACATAGAAGTT
GGCATCTGCAATGAAGCCGGATTTAGGAGGCTTACTCCCACCGAAGTTAAGGATTACCTG
GCTGCCATTGCATAATAACGAAGTGACTGAAAATCCTGAATTTCAGATCTCTCTCTACTT
AAACATGTTTAAAGTATGTTTTGTTTTGCAGACTTTTTGCATACTTATTTCTACATGGTT
TAATGGACTGATGTTTTTAAAATGAGACTTATAAATCATAATAAACTGTTAAATTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACTTTTAACACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51094758|gb|EAL24005.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51094758|gb|EAL24005.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               804-923, - strand, RNAz p=0.511092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               804-923, - strand, RNAz p=0.511092

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               325-1212, gnl|bosTau2|chr10 (57522870-57521976)
               

               
               325-1212, gnl|Hg17|chr2 (202869518-202870708)
               

               
               325-1212, gnl|Mm7|chrUn_random (12289826-12288963)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               325-1212, gnl|bosTau2|chr10 (57522870-57521976)
               

               
               325-1212, gnl|Hg17|chr2 (202869518-202870708)
               

               
               325-1212, gnl|Mm7|chrUn_random (12289826-12288963)

Expressed library(ies): 76 entry(ies)

More info

Expressed library(ies): 76 entry(ies)

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               gul (2.48624)
               

               
               thg (2.02865)
               

               
               isp (1.50376)
               

               
               spc (1.47376)
               

               
               spl (1.43184)
               

               
               mgp (1.38408)
               

               
               ski (1.32062)
               

               
               lin (1.31043)
               

               
               bla (1.24347)
               

               
               cbe (1.19617)
               

               
               tbr (1.07925)
               

               
               lyg (1.06482)
               

               
               sin (1.04969)
               

               
               bfe (1.049)
               

               
               ova (1.03306)
               

               
               fat (1.03199)
               

               
               pro (1.02407)
               

               
               sug (1.01833)
               

               
               vin (0.997672)
               

               
               pan (0.943841)
               

               
               tra (0.738552)
               

               
               liv (0.731422)
               

               
               rec (0.692281)
               

               
               cut (0.679694)
               

               
               ste (0.676041)
               

               
               pgl (0.592417)
               

               
               aor (0.585823)
               

               
               cmu (0.55918)
               

               
               nca (0.547495)
               

               
               fty (0.527519)
               

               
               ret (0.514933)
               

               
               ecc (0.46014)
               

               
               csk (0.422238)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               mgm (0.360685)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               ssp (0.271039)
               

               
               eep (0.245128)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 76 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (2.48624)
               

               
               thg (2.02865)
               

               
               isp (1.50376)
               

               
               spc (1.47376)
               

               
               spl (1.43184)
               

               
               mgp (1.38408)
               

               
               ski (1.32062)
               

               
               lin (1.31043)
               

               
               bla (1.24347)
               

               
               cbe (1.19617)
               

               
               tbr (1.07925)
               

               
               lyg (1.06482)
               

               
               sin (1.04969)
               

               
               bfe (1.049)
               

               
               ova (1.03306)
               

               
               fat (1.03199)
               

               
               pro (1.02407)
               

               
               sug (1.01833)
               

               
               vin (0.997672)
               

               
               pan (0.943841)
               

               
               tra (0.738552)
               

               
               liv (0.731422)
               

               
               rec (0.692281)
               

               
               cut (0.679694)
               

               
               ste (0.676041)
               

               
               pgl (0.592417)
               

               
               aor (0.585823)
               

               
               cmu (0.55918)
               

               
               nca (0.547495)
               

               
               fty (0.527519)
               

               
               ret (0.514933)
               

               
               ecc (0.46014)
               

               
               csk (0.422238)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               mgm (0.360685)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               ssp (0.271039)
               

               
               eep (0.245128)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	325-1212, gnl\|bosTau2\|chr10 (57522870-57521976)
	325-1212, gnl\|Hg17\|chr2 (202869518-202870708)
	325-1212, gnl\|Mm7\|chrUn_random (12289826-12288963)

	gul (2.48624)
	thg (2.02865)
	isp (1.50376)
	spc (1.47376)
	spl (1.43184)
	mgp (1.38408)
	ski (1.32062)
	lin (1.31043)
	bla (1.24347)
	cbe (1.19617)
	tbr (1.07925)
	lyg (1.06482)
	sin (1.04969)
	bfe (1.049)
	ova (1.03306)
	fat (1.03199)
	pro (1.02407)
	sug (1.01833)
	vin (0.997672)
	pan (0.943841)
	tra (0.738552)
	liv (0.731422)
	rec (0.692281)
	cut (0.679694)
	ste (0.676041)
	pgl (0.592417)
	aor (0.585823)
	cmu (0.55918)
	nca (0.547495)
	fty (0.527519)
	ret (0.514933)
	ecc (0.46014)
	csk (0.422238)
	hlv (0.417769)
	amn (0.417711)
	pla (0.401016)
	col (0.390016)
	kid (0.389206)
	elu (0.385356)
	nlu (0.383362)
	nep (0.36785)
	mgm (0.360685)
	jca (0.34188)
	eye (0.341006)
	fhi (0.339155)
	sme (0.305437)
	jej (0.296765)
	eje (0.296501)
	cte (0.29274)
	lnt (0.284616)
	ssp (0.271039)
	eep (0.245128)
	cbl (0.229595)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	ldo (0.194005)
	sag (0.182715)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	cst (0.140036)
	che (0.136314)
	nmm (0.132802)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	nbm (0.0993246)