Non-Coding RNA Search

Ss1.1-rnca15b_e11.5

Sequence:


               
               AAAAAAAAAAAAGGAACAACCTAGCTGCCATCAAGGTGCTACAAGAGTCGTATGAAGATA
TTTTTGGCATTTCTAGGAAAGTATCATTAGCCAATAAGTAATTTAGTGATGTCACAGATT
GTACCAGCTCTTAATTATGTTAAATATCTATTCAGTTTCATGTGATCTCTGGGAAAAAAA
AAAAGATTGCTGCCTTGGTGCTAATATTGTATGTATTTAAGCGATCATCAGACTCAGAAA
TGTAAACAGTTTAATAAAAGGGAGAAAACAAAGGACAGCTTCCAGTGGACAGAATCACTT
GGATAAAATAAGACTGTTTACCCTTTTTTTGAGACATACCTTTCTGGAAAGAGACTTGGA
CTTGTTTCTTGTTGTTATTGTTACTGATACTTTGCTTCAGTCCATGGTGCGTTGCTCTCT
CTCTGGTTAAATGGAGGGTCCCCACAAGCAGTTTCATTACCAAGTGATATTGAGCAAATG
AGACCTGCTCAGCGTTTTGACAAGATATTCTCAAATGGTGTCTACTTTAACAATTGTAAT
ACAGAAAGATGCATGGGATGGGGTGCTATTAGCACCCCCAGCATATCTGAAGAAACTAAG
GACCAGGCTCTTCATCATCGGGATTGCCTTCTACATGAAAACATTGGCTGGTGACTTGAC
TTCTATTTAGGCCAGAAGCCTAAAGCTCTGCCAGTGTTGGTGACTGCTGCAGTAATTGGA
ATTCACAAGAAGAAATGAACTATGGAGTTCAAGATGCCTGAATCTTTCTCAGCTTCTGTG
AATCTTTGGACATGCTCTTGGTTACTTCTTTCCAAAACAGAAGTACCAAAGCCCTGGTGT
TTCTGCTCTTCTGCCTGGACTGAGGAAAAGTCATTATTCATGTCAGACACTTGGATTTGA
GAAACCCTCCCATTTCCGAAAACCAGAGATTCAGAGAAACCTGGCAGTATTCTCCAAACC
CAAACTCCAAGGCCCTCCAGGAAGTTATATTCAATGTATGAATAAGTGTTATTCTCCATC
ATTAATACATTGTGAAAATATACTATGAATAAATACCACAACCACATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAGGAACAACCTAGCTGCCATCAAGGTGCTACAAGAGTCGTATGAAGATA
TTTTTGGCATTTCTAGGAAAGTATCATTAGCCAATAAGTAATTTAGTGATGTCACAGATT
GTACCAGCTCTTAATTATGTTAAATATCTATTCAGTTTCATGTGATCTCTGGGAAAAAAA
AAAAGATTGCTGCCTTGGTGCTAATATTGTATGTATTTAAGCGATCATCAGACTCAGAAA
TGTAAACAGTTTAATAAAAGGGAGAAAACAAAGGACAGCTTCCAGTGGACAGAATCACTT
GGATAAAATAAGACTGTTTACCCTTTTTTTGAGACATACCTTTCTGGAAAGAGACTTGGA
CTTGTTTCTTGTTGTTATTGTTACTGATACTTTGCTTCAGTCCATGGTGCGTTGCTCTCT
CTCTGGTTAAATGGAGGGTCCCCACAAGCAGTTTCATTACCAAGTGATATTGAGCAAATG
AGACCTGCTCAGCGTTTTGACAAGATATTCTCAAATGGTGTCTACTTTAACAATTGTAAT
ACAGAAAGATGCATGGGATGGGGTGCTATTAGCACCCCCAGCATATCTGAAGAAACTAAG
GACCAGGCTCTTCATCATCGGGATTGCCTTCTACATGAAAACATTGGCTGGTGACTTGAC
TTCTATTTAGGCCAGAAGCCTAAAGCTCTGCCAGTGTTGGTGACTGCTGCAGTAATTGGA
ATTCACAAGAAGAAATGAACTATGGAGTTCAAGATGCCTGAATCTTTCTCAGCTTCTGTG
AATCTTTGGACATGCTCTTGGTTACTTCTTTCCAAAACAGAAGTACCAAAGCCCTGGTGT
TTCTGCTCTTCTGCCTGGACTGAGGAAAAGTCATTATTCATGTCAGACACTTGGATTTGA
GAAACCCTCCCATTTCCGAAAACCAGAGATTCAGAGAAACCTGGCAGTATTCTCCAAACC
CAAACTCCAAGGCCCTCCAGGAAGTTATATTCAATGTATGAATAAGTGTTATTCTCCATC
ATTAATACATTGTGAAAATATACTATGAATAAATACCACAACCACATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               11-1068, gnl|bosTau2|chr22 (27839750-27838694)
               

               
               11-1068, gnl|Hg17|chr3 (64477438-64476374)
               

               
               11-1068, gnl|Mm7|chr6 (92861811-92860850)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1068, gnl|bosTau2|chr22 (27839750-27838694)
               

               
               11-1068, gnl|Hg17|chr3 (64477438-64476374)
               

               
               11-1068, gnl|Mm7|chr6 (92861811-92860850)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               pgl (0.35545)
               

               
               tes (0.207814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               pgl (0.35545)
               

               
               tes (0.207814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)

	11-1068, gnl\|bosTau2\|chr22 (27839750-27838694)
	11-1068, gnl\|Hg17\|chr3 (64477438-64476374)
	11-1068, gnl\|Mm7\|chr6 (92861811-92860850)

	amn (0.417711)
	pgl (0.35545)
	tes (0.207814)
	fat (0.147427)
	liv (0.146284)
	nca (0.136874)
	nmm (0.132802)
	bla (0.124347)