Ss1.1-rnca15b_h14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGCTGGTGCTCGTGGCGCCCCGGGTGAACGTGGAGAGACTGGACCCCCCGGACCTGCT GGATTTGCTGGTCCTCCCGGTGCTGACGGCCAGCCCGGTGCCAAAGGCGAGCAAGGAGAG GCCGGCCAGAAAGGTGACGCTGGTGCCCCAGGTCCTCAGGGGCCCTCTGGAGCTCCTGGG CCTCAGGGTCCCACTGGTGTGACTGGTCCTAAAGGAGCCCGAGGTGCTCAAGGCCCCCCG GGAGCCACCGGATTCCCCGGAGCTGCTGGCCGCGTCGGACCCCCAGGCTCCAATGGCAAC CCTGGACCCCCTGGTCCCCCTGGTCCTTCTGGAAAAGATGGTCCCAAAGGCGCTCGAGGA GACAGTGGCCCCCCTGGCCGAGCTGGTGACCCTGGCCTCCAAGGTCCTGCTGGACCCCCT GGCGAGAAGGGAGAGCCTGGAGAGGATGGTCCCTCTGGTCCTGATGGTCCTCCAGGTCCC CAGGGTCTGGCTGGTCAACGGGGCATCGTCGGTCTGCCTGGACAGCGTGGTGAGCGAGGA TTCCCCGGCCTGCCTGGCCCATCGGGCGAGCCTGGCAAGCAGGGAGCTCCCGGAGCATCT GGAGACCGAGGTCCCCCTGGTCCTGTCGGTCCTCCCGGCCTGACTGGTCCTTCTGGTGAA CCTGGACGTGAGGGAAGCCCCGGTGCTGATGGCCCCCCTGGCAGAGATGGTGCAGCTGGA GTCAAGGGTGATCGTGGTGAGACTGGTGCTGCGGGCGCTCCTGGAGCCCCTGGGCCCCCT GGCTCTCCTGGCCCCGCCGGCCCCACTGGCAAGCAGGGAGACCGAGGAGAAGCTGGAGCA CAAGGCCCCATGGGACCTGCAGGACCAGCTGGAGCCCGAGGAATGCCAGGCCCTCAAGGC CCCCGAGGTGACAAAGGAGAAGCTGGAGAGGCTGGCGAGAGGGGACTGAAGGGACACCGT GGCTTCACTGGTCTGCAGGGTCTGCCCGGCCCCCCTGGTCCTTCTGGAGACCAAGGTGCT TCTGGTCCTGCTGGTCCTTCTGGCCCTAGAGGTCCTCCTGGCCCCGTCGGTCCTTCAGGC AAAGATGGTGCTAATGGAATCCCTGGCCCCATTGGACCTCCTGGTCCCCGTGGACGTTCT GGTGAAACTGGCCCCGCTGGTCCTCCTGGAACTCCTGGCCCCCCTGGCCCCCCAGGTCCC CCGGGTCCTGGCATCGACATGTCCGCCTTTGCTGGCCTAGGCCAGAGAGAGAAGGGTCCC GACCCCCTGCAGTACATGCGGGCCGACGAGGCGGCCGGCAACCTGAGGCAGCACGATGCT GAGGTGGATGCCACGCTCAAGTCCCTCAACAACCAGATTGAGAGCATCCGCAGTCCCGAG GGCTCCCGCAAGAACCCTGCTCGCACCTGCCGGGACCTGAAACTCTGCCACCCCGAGTGG AAGAGCGGAGACTACTGGATCGACCCCAACCAGGGATGCACTTTGGACGCCATGAAGGTT TTCTGCAACATGGAGACTGGTGAGACCTGCGTCTACCCCAGCCCAGCCAGCGTTCCCAAG AAGAACTGGTGGAGCAGCAAGAGCAAGGACAAGAAACACATCTGGTTTGGAGAAACCATC AATGGCGGCTTCCACTTCAGCTATGGAGATGACAACCTGGCTCCTAACACTGCCAACGTC CAGATGACCTTCCTGCGCCTGCTGTCCACCGAGGGCTCCCAGAACATCACCTACCACTGC AAGAACAGCATTGCCTACCTGGACGAAGCTGCTGGCAACCTCAAGAAAGCCCTGCTCATC CAGGGCTCCAACGACGTGGAGATCCGGGCTGAGGGCAACAGCAGGTTCACGTATACTGTT CTGAAGGATGGCTGCACGAAACACACCGGTAAGTGGGGCCAGACTATGATCGAGTACCGG TCACAGAAGACCTCTCGCCTCCCCATCATTGACATCGCGCCTATGGACATAGGAGGGCCC GAGCAGGAATTCGGTGTGGACATAGGGCCTGTCTGCTTCTTGTAAAAACCTGAACCCAGA AACAACACAATCCATTGCAAACCCAAAGGACCCAAGTACTTTCCAATCTCAGTCACTCTA GGACTCTGCACTGAATGGCTGACCTGACCTGATGTCCATTCATCCCACCTTCTCACAGTT TGGACTTTTCTCCCCTCTCTAAGAGACCTGAACTGGGCAGACTGCAAAATAAAATCTCGG TGTTCTATTTATTTATTGTCTTCCTGTAAGACCTTTGGGTCGAGGCAGAGGCAGGAAACT AACTGGTGTGAGTCAAACGCCCCCTGAGTGACTGCCCCCCAGCCCAAGCAAGAGGACCCC CTTCAGGTGCCGGGCGCAGGAACTGTGTGTGCCCTACACAATGGTGCTATTCTGTGTCAA ACACCTCTGTATTTTTTAAAACGTCAATTGATATTAAAAACAAAAAAATTATTGGAAAGT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGCTGGTGCTCGTGGCGCCCCGGGTGAACGTGGAGAGACTGGACCCCCCGGACCTGCT GGATTTGCTGGTCCTCCCGGTGCTGACGGCCAGCCCGGTGCCAAAGGCGAGCAAGGAGAG GCCGGCCAGAAAGGTGACGCTGGTGCCCCAGGTCCTCAGGGGCCCTCTGGAGCTCCTGGG CCTCAGGGTCCCACTGGTGTGACTGGTCCTAAAGGAGCCCGAGGTGCTCAAGGCCCCCCG GGAGCCACCGGATTCCCCGGAGCTGCTGGCCGCGTCGGACCCCCAGGCTCCAATGGCAAC CCTGGACCCCCTGGTCCCCCTGGTCCTTCTGGAAAAGATGGTCCCAAAGGCGCTCGAGGA GACAGTGGCCCCCCTGGCCGAGCTGGTGACCCTGGCCTCCAAGGTCCTGCTGGACCCCCT GGCGAGAAGGGAGAGCCTGGAGAGGATGGTCCCTCTGGTCCTGATGGTCCTCCAGGTCCC CAGGGTCTGGCTGGTCAACGGGGCATCGTCGGTCTGCCTGGACAGCGTGGTGAGCGAGGA TTCCCCGGCCTGCCTGGCCCATCGGGCGAGCCTGGCAAGCAGGGAGCTCCCGGAGCATCT GGAGACCGAGGTCCCCCTGGTCCTGTCGGTCCTCCCGGCCTGACTGGTCCTTCTGGTGAA CCTGGACGTGAGGGAAGCCCCGGTGCTGATGGCCCCCCTGGCAGAGATGGTGCAGCTGGA GTCAAGGGTGATCGTGGTGAGACTGGTGCTGCGGGCGCTCCTGGAGCCCCTGGGCCCCCT GGCTCTCCTGGCCCCGCCGGCCCCACTGGCAAGCAGGGAGACCGAGGAGAAGCTGGAGCA CAAGGCCCCATGGGACCTGCAGGACCAGCTGGAGCCCGAGGAATGCCAGGCCCTCAAGGC CCCCGAGGTGACAAAGGAGAAGCTGGAGAGGCTGGCGAGAGGGGACTGAAGGGACACCGT GGCTTCACTGGTCTGCAGGGTCTGCCCGGCCCCCCTGGTCCTTCTGGAGACCAAGGTGCT TCTGGTCCTGCTGGTCCTTCTGGCCCTAGAGGTCCTCCTGGCCCCGTCGGTCCTTCAGGC AAAGATGGTGCTAATGGAATCCCTGGCCCCATTGGACCTCCTGGTCCCCGTGGACGTTCT GGTGAAACTGGCCCCGCTGGTCCTCCTGGAACTCCTGGCCCCCCTGGCCCCCCAGGTCCC CCGGGTCCTGGCATCGACATGTCCGCCTTTGCTGGCCTAGGCCAGAGAGAGAAGGGTCCC GACCCCCTGCAGTACATGCGGGCCGACGAGGCGGCCGGCAACCTGAGGCAGCACGATGCT GAGGTGGATGCCACGCTCAAGTCCCTCAACAACCAGATTGAGAGCATCCGCAGTCCCGAG GGCTCCCGCAAGAACCCTGCTCGCACCTGCCGGGACCTGAAACTCTGCCACCCCGAGTGG AAGAGCGGAGACTACTGGATCGACCCCAACCAGGGATGCACTTTGGACGCCATGAAGGTT TTCTGCAACATGGAGACTGGTGAGACCTGCGTCTACCCCAGCCCAGCCAGCGTTCCCAAG AAGAACTGGTGGAGCAGCAAGAGCAAGGACAAGAAACACATCTGGTTTGGAGAAACCATC AATGGCGGCTTCCACTTCAGCTATGGAGATGACAACCTGGCTCCTAACACTGCCAACGTC CAGATGACCTTCCTGCGCCTGCTGTCCACCGAGGGCTCCCAGAACATCACCTACCACTGC AAGAACAGCATTGCCTACCTGGACGAAGCTGCTGGCAACCTCAAGAAAGCCCTGCTCATC CAGGGCTCCAACGACGTGGAGATCCGGGCTGAGGGCAACAGCAGGTTCACGTATACTGTT CTGAAGGATGGCTGCACGAAACACACCGGTAAGTGGGGCCAGACTATGATCGAGTACCGG TCACAGAAGACCTCTCGCCTCCCCATCATTGACATCGCGCCTATGGACATAGGAGGGCCC GAGCAGGAATTCGGTGTGGACATAGGGCCTGTCTGCTTCTTGTAAAAACCTGAACCCAGA AACAACACAATCCATTGCAAACCCAAAGGACCCAAGTACTTTCCAATCTCAGTCACTCTA GGACTCTGCACTGAATGGCTGACCTGACCTGATGTCCATTCATCCCACCTTCTCACAGTT TGGACTTTTCTCCCCTCTCTAAGAGACCTGAACTGGGCAGACTGCAAAATAAAATCTCGG TGTTCTATTTATTTATTGTCTTCCTGTAAGACCTTTGGGTCGAGGCAGAGGCAGGAAACT AACTGGTGTGAGTCAAACGCCCCCTGAGTGACTGCCCCCCAGCCCAAGCAAGAGGACCCC CTTCAGGTGCCGGGCGCAGGAACTGTGTGTGCCCTACACAATGGTGCTATTCTGTGTCAA ACACCTCTGTATTTTTTAAAACGTCAATTGATATTAAAAACAAAAAAATTATTGGAAAGT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2230-2348, - strand, RNAz p=0.607043 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2230-2348, - strand, RNAz p=0.607043 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1159-1451, gnl|bosTau2|chr5 (25500627-25500335) | |
| 1159-1451, gnl|canFam2|chr27 (9797247-9797066) | |
| 1159-1451, gnl|danRer3|chrUn (140983489-140983670) | |
| 1159-1451, gnl|dasNov1|scaffold_10334 (718-537) | |
| 1159-1451, gnl|echTel1|scaffold_300375 (3791-3613) | |
| 1159-1451, gnl|fr1|chrUn (70098751-70098570) | |
| 1159-1451, gnl|galGal2|chrUn (134206019-134205838) | |
| 1159-1451, gnl|hg17|chr12 (46655363-46655544) | |
| 1159-1451, gnl|Hg17|chr12 (46655655-46655363) | |
| 1159-1451, gnl|loxAfr1|scaffold_26320 (27745-27567) | |
| 1159-1451, gnl|mm7|chr15 (97980900-97981081) | |
| 1159-1451, gnl|Mm7|chr15 (97981192-97980888) | |
| 1159-1451, gnl|monDom2|scaffold_234 (234370-234551) | |
| 1159-1451, gnl|oryCun1|scaffold_213621 (7814-7633) | |
| 1159-1451, gnl|panTro1|chr10 (47724932-47725113) | |
| 1159-1451, gnl|rheMac2|chr11 (45048119-45048300) | |
| 1159-1451, gnl|rn3|chr7 (136757284-136757465) | |
| 1159-1451, gnl|tetNig1|chr9 (7674198-7674017) | |
| 1159-1451, gnl|xenTro1|scaffold_136 (165676-165497) | |
| 1878-2461, gnl|bosTau2|chr5 (25498674-25498093) | |
| 1878-2461, gnl|Hg17|chr12 (46653604-46653017) | |
| 1878-2461, gnl|Mm7|chr15 (97979370-97978785) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1159-1451, gnl|bosTau2|chr5 (25500627-25500335) | |
| 1159-1451, gnl|canFam2|chr27 (9797247-9797066) | |
| 1159-1451, gnl|danRer3|chrUn (140983489-140983670) | |
| 1159-1451, gnl|dasNov1|scaffold_10334 (718-537) | |
| 1159-1451, gnl|echTel1|scaffold_300375 (3791-3613) | |
| 1159-1451, gnl|fr1|chrUn (70098751-70098570) | |
| 1159-1451, gnl|galGal2|chrUn (134206019-134205838) | |
| 1159-1451, gnl|hg17|chr12 (46655363-46655544) | |
| 1159-1451, gnl|Hg17|chr12 (46655655-46655363) | |
| 1159-1451, gnl|loxAfr1|scaffold_26320 (27745-27567) | |
| 1159-1451, gnl|mm7|chr15 (97980900-97981081) | |
| 1159-1451, gnl|Mm7|chr15 (97981192-97980888) | |
| 1159-1451, gnl|monDom2|scaffold_234 (234370-234551) | |
| 1159-1451, gnl|oryCun1|scaffold_213621 (7814-7633) | |
| 1159-1451, gnl|panTro1|chr10 (47724932-47725113) | |
| 1159-1451, gnl|rheMac2|chr11 (45048119-45048300) | |
| 1159-1451, gnl|rn3|chr7 (136757284-136757465) | |
| 1159-1451, gnl|tetNig1|chr9 (7674198-7674017) | |
| 1159-1451, gnl|xenTro1|scaffold_136 (165676-165497) | |
| 1878-2461, gnl|bosTau2|chr5 (25498674-25498093) | |
| 1878-2461, gnl|Hg17|chr12 (46653604-46653017) | |
| 1878-2461, gnl|Mm7|chr15 (97979370-97978785) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| nca (43.2521) | |
| nmm (1.85923) | |
| tra (0.246184) | |
| eru (0.240096) | |
| mas (0.210305) | |
| nep (0.183925) | |
| eye (0.170503) | |
| eep (0.122564) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (43.2521) | |
| nmm (1.85923) | |
| tra (0.246184) | |
| eru (0.240096) | |
| mas (0.210305) | |
| nep (0.183925) | |
| eye (0.170503) | |
| eep (0.122564) | |
| clu (0.119646) | |
| jca (0.11396) |