Non-Coding RNA Search

Ss1.1-rnca16b_b10.5

Sequence:


               
               TACTGCAGTTATTTACATTTAAAACACTGTCTCTGTTTCTCATGGACTTTTGTAAAAGTT
CCTATAAGGGTGTATGTTTTGGAATGAAGGGACGCTGGGTGAAAGGGATCTTTTTTTTCC
CATGTTTTTCTTTTTCCACCTTCTCATTGATCATAGCCATCTGATGCAGGGGTTTGAGGG
GGTGTTCTGAACATCTTTACTGACATGCCTTCCAAACTTTGTTTTTCTTGCATACTTTTC
TTTCCTGACATGATTCATTAGCAGACATAGTGTCTTAATTAGAAACTAAATTTTTTTCTC
TTTGGGGCTTGTTCCTGTAATAAATCACATATTTAACTGTACCAAGGCAGAACACTCTAG
GAAAGTCTCAGCCACTGTCACATGCAAATCACTTGTTTCCTATTATACGACTGAACAGAG
TGTTCCATTCTCCTCACAAGTGGTAAATGGTTAGTGCTGCACTGCCTAGATAAATCCCTG
TGTTTTACCGAACACTGAAAACGCTGCAAGTAATGCTTCGAGTCTGGAAGTTTGACAGTA
GGATATTTTTAATCATTTGGGGCTGAAACCATCTGTTAATAAGTAACATTTGCCCATATC
ATTGAGAATGGTAATACCCTAGATGGCCATCCTTGAGTAATATCTTAGAGCAGTAGCCTT
AAGTCCAAGTCCAGAGAGACCAAGTGATGCATAAAAGATTTAGTTCATCACCAGAAATTC
CACCTAACAAAGATTCTTTTGGCAGTGGCGAGGCCATTCTTGATGTTTATAATGAGGCTT
AGACACTTCCTGATGACTCTGGGAAGTACATTATAGAATCCAGATTAACTGTTTCTAATG
ACGTTATGGTAAATCTCTGCATGTCTGAATTTATGCATCATTTAGCTGATAGATAATGAC
AGCTTCAAAACCTCTCATTAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGCAGTTATTTACATTTAAAACACTGTCTCTGTTTCTCATGGACTTTTGTAAAAGTT
CCTATAAGGGTGTATGTTTTGGAATGAAGGGACGCTGGGTGAAAGGGATCTTTTTTTTCC
CATGTTTTTCTTTTTCCACCTTCTCATTGATCATAGCCATCTGATGCAGGGGTTTGAGGG
GGTGTTCTGAACATCTTTACTGACATGCCTTCCAAACTTTGTTTTTCTTGCATACTTTTC
TTTCCTGACATGATTCATTAGCAGACATAGTGTCTTAATTAGAAACTAAATTTTTTTCTC
TTTGGGGCTTGTTCCTGTAATAAATCACATATTTAACTGTACCAAGGCAGAACACTCTAG
GAAAGTCTCAGCCACTGTCACATGCAAATCACTTGTTTCCTATTATACGACTGAACAGAG
TGTTCCATTCTCCTCACAAGTGGTAAATGGTTAGTGCTGCACTGCCTAGATAAATCCCTG
TGTTTTACCGAACACTGAAAACGCTGCAAGTAATGCTTCGAGTCTGGAAGTTTGACAGTA
GGATATTTTTAATCATTTGGGGCTGAAACCATCTGTTAATAAGTAACATTTGCCCATATC
ATTGAGAATGGTAATACCCTAGATGGCCATCCTTGAGTAATATCTTAGAGCAGTAGCCTT
AAGTCCAAGTCCAGAGAGACCAAGTGATGCATAAAAGATTTAGTTCATCACCAGAAATTC
CACCTAACAAAGATTCTTTTGGCAGTGGCGAGGCCATTCTTGATGTTTATAATGAGGCTT
AGACACTTCCTGATGACTCTGGGAAGTACATTATAGAATCCAGATTAACTGTTTCTAATG
ACGTTATGGTAAATCTCTGCATGTCTGAATTTATGCATCATTTAGCTGATAGATAATGAC
AGCTTCAAAACCTCTCATTAAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-221, + strand, RNAz p=0.867913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-221, + strand, RNAz p=0.867913

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-924, gnl|bosTau2|chr4 (27758834-27757922)
               

               
               1-924, gnl|Hg17|chr7 (111568117-111569056)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr4 (27758834-27757922)
               

               
               1-924, gnl|Hg17|chr7 (111568117-111569056)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               nca (0.136874)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nca (0.136874)

	1-924, gnl\|bosTau2\|chr4 (27758834-27757922)
	1-924, gnl\|Hg17\|chr7 (111568117-111569056)