Non-Coding RNA Search

Ss1.1-rnca16b_m19.5

Sequence:


               
               CTGGGCTGGGGGCTGTCCTCTCCCCTACCTCCAGCCACGGCTTGCACAGCCATGGCCGGC
CACGTAGGCCAGGAGGCCAAGGCAAGATTGGCATAGGAAGGGCCCACAAAGAAGCTGGAG
TGGCAGGAGCCCTGGCCTGGCTTCCTGTCCCTCTGCGGGGCCCTTGCTCTGCAGAGCCAA
GAGGGGTGGTTGCTGGTATCCCCACCCCCACCCCCAGGCTCCTTTCCCACAAGCATGTGG
CTCCTGCTTTCTGAGATGCCTGTGTCGTCCCCTCCCCCCGGCCCCCACGCTCGTGCACAC
AGATCCTCGGGAACATATGAAGCAGAGGAGGGGCTCGGCTGCGCCACTTGCCGAGCTCCC
TGCCCACTGCACTGAGTCGGGGCCCAGCCCCGACCTCTCCCCTGAGCCCGGGATGTGGCC
AGAGCCCCCTCTGGGGACCCCTCTCAGCTCTTCCCTGCCCACCCAGAGTTCTGTTCCGGG
GTCAGCAGCTCACCTGCCAGCTTCTGCATCTCCCTTCTCCCTCCCTCCTTCCCTAAGGAC
CTCCCCCCATTTCTCTCATGCAAGCCATTAATCTGGAGACAGAGATGAGTTTGCGATCGA
TTCTTGGGCCACTTTTTTTTTATTATGTTCTGTGCTGTGGTTCGTCTCACTCTTCTCTGC
TTCTGTGTTTGTCTCTTTAAATGTTGACGCCACCAGAAGCCTGGTGCTATTCTGTATCTC
AGTATGGAGGAAGAAAAGGGGGCCTAGCTGCAGGCGAGGACCCGAGTTGTTAGTTTGGAA
ATAGAGCAACTAGGTGTACAACCCTCTTAGAGGTTATTATGGGCCTTTTTATGCCATCCT
GTTAAATTTCACAATTAATCTTAGGCCAAGAGACGTGAAATAAATTTGTTAAAACAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGCTGGGGGCTGTCCTCTCCCCTACCTCCAGCCACGGCTTGCACAGCCATGGCCGGC
CACGTAGGCCAGGAGGCCAAGGCAAGATTGGCATAGGAAGGGCCCACAAAGAAGCTGGAG
TGGCAGGAGCCCTGGCCTGGCTTCCTGTCCCTCTGCGGGGCCCTTGCTCTGCAGAGCCAA
GAGGGGTGGTTGCTGGTATCCCCACCCCCACCCCCAGGCTCCTTTCCCACAAGCATGTGG
CTCCTGCTTTCTGAGATGCCTGTGTCGTCCCCTCCCCCCGGCCCCCACGCTCGTGCACAC
AGATCCTCGGGAACATATGAAGCAGAGGAGGGGCTCGGCTGCGCCACTTGCCGAGCTCCC
TGCCCACTGCACTGAGTCGGGGCCCAGCCCCGACCTCTCCCCTGAGCCCGGGATGTGGCC
AGAGCCCCCTCTGGGGACCCCTCTCAGCTCTTCCCTGCCCACCCAGAGTTCTGTTCCGGG
GTCAGCAGCTCACCTGCCAGCTTCTGCATCTCCCTTCTCCCTCCCTCCTTCCCTAAGGAC
CTCCCCCCATTTCTCTCATGCAAGCCATTAATCTGGAGACAGAGATGAGTTTGCGATCGA
TTCTTGGGCCACTTTTTTTTTATTATGTTCTGTGCTGTGGTTCGTCTCACTCTTCTCTGC
TTCTGTGTTTGTCTCTTTAAATGTTGACGCCACCAGAAGCCTGGTGCTATTCTGTATCTC
AGTATGGAGGAAGAAAAGGGGGCCTAGCTGCAGGCGAGGACCCGAGTTGTTAGTTTGGAA
ATAGAGCAACTAGGTGTACAACCCTCTTAGAGGTTATTATGGGCCTTTTTATGCCATCCT
GTTAAATTTCACAATTAATCTTAGGCCAAGAGACGTGAAATAAATTTGTTAAAACAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6UY31_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6UY31_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               475-621, - strand, RNAz p=0.979449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-621, - strand, RNAz p=0.979449

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-905, gnl|bosTau2|chr19 (37557277-37556360)
               

               
               9-905, gnl|Hg17|chr17 (40182458-40183441)
               

               
               9-905, gnl|Mm7|chr11 (102862897-102863843)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-905, gnl|bosTau2|chr19 (37557277-37556360)
               

               
               9-905, gnl|Hg17|chr17 (40182458-40183441)
               

               
               9-905, gnl|Mm7|chr11 (102862897-102863843)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	9-905, gnl\|bosTau2\|chr19 (37557277-37556360)
	9-905, gnl\|Hg17\|chr17 (40182458-40183441)
	9-905, gnl\|Mm7\|chr11 (102862897-102863843)