Non-Coding RNA Search

Ss1.1-rnca17b_b24.5

Sequence:


               
               CAAGACCCAGCCCCACACGAAGAGATCCATATGGTTTTGGAGACAGTCGAGATACAAGAC
GTGATCGATCCCCAATTCGAGGAAGTCCAAGGAGAGAACCCAGGGATGGCAGAAATGGCC
GAGATGCTCGGGATAGCAGAGACATGCGAGACATGCGAGACATGCGAGATCCCCGAGATT
TGCGGGACCACAGAGATAGCAGAGACATGCGGGATCACAGAGACAGCAGAAGTATGCGTG
ATGCTCGGGACCTGAGGGATCTTAGAGACTTTCGTGACCTAAGAGACTCTAGGGATTTTC
GAGATCACCGGGACCCCATGTATGACAGATACAGAGATATGAGAGACTCCCGAGATCCTA
TGTACAGGAGAGAAGGCTCATACGACCGATACCTGCGAATGGATGACTATTGCAGGAGGA
AGGATGACTCTTACTTTGACCGTTACAGAGATAGCTTTGATGGACGAGGCCCTCCAGGCC
CAGAAAATCAGTCTCGTGCAAAAGAGCGTTTGAAACGTGAGGAACGGCGAAGAGAAGAGC
TTTATCGTCAATATTGTGAGGAAATCCANAGACGATTTGATGCTGAGAGGCCTGTTGATT
GTTCTGTGATTGTGGTCAACAAGCAGACTAAAGATTATGCTGAATCTGTGGGGCGGAAGG
TTCGAGACCTATGCATGGTAGTGGACTTGATCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGACCCAGCCCCACACGAAGAGATCCATATGGTTTTGGAGACAGTCGAGATACAAGAC
GTGATCGATCCCCAATTCGAGGAAGTCCAAGGAGAGAACCCAGGGATGGCAGAAATGGCC
GAGATGCTCGGGATAGCAGAGACATGCGAGACATGCGAGACATGCGAGATCCCCGAGATT
TGCGGGACCACAGAGATAGCAGAGACATGCGGGATCACAGAGACAGCAGAAGTATGCGTG
ATGCTCGGGACCTGAGGGATCTTAGAGACTTTCGTGACCTAAGAGACTCTAGGGATTTTC
GAGATCACCGGGACCCCATGTATGACAGATACAGAGATATGAGAGACTCCCGAGATCCTA
TGTACAGGAGAGAAGGCTCATACGACCGATACCTGCGAATGGATGACTATTGCAGGAGGA
AGGATGACTCTTACTTTGACCGTTACAGAGATAGCTTTGATGGACGAGGCCCTCCAGGCC
CAGAAAATCAGTCTCGTGCAAAAGAGCGTTTGAAACGTGAGGAACGGCGAAGAGAAGAGC
TTTATCGTCAATATTGTGAGGAAATCCANAGACGATTTGATGCTGAGAGGCCTGTTGATT
GTTCTGTGATTGTGGTCAACAAGCAGACTAAAGATTATGCTGAATCTGTGGGGCGGAAGG
TTCGAGACCTATGCATGGTAGTGGACTTGATCTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5JY17_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JY17_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-368, + strand, RNAz p=0.637618

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-368, + strand, RNAz p=0.637618

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC056872, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC056872, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               11-368, gnl|bosTau2|chr13 (54839321-54838982)
               

               
               11-368, gnl|Hg17|chr20 (44132594-44132255)
               

               
               11-368, gnl|Mm7|chr2 (164753828-164753489)
               


               
               503-631, gnl|bosTau2|chr13 (54836479-54836351)
               

               
               503-631, gnl|Hg17|chr20 (44129229-44129101)
               

               
               503-631, gnl|Mm7|chr2 (164750105-164749977)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-368, gnl|bosTau2|chr13 (54839321-54838982)
               

               
               11-368, gnl|Hg17|chr20 (44132594-44132255)
               

               
               11-368, gnl|Mm7|chr2 (164753828-164753489)
               


               
               503-631, gnl|bosTau2|chr13 (54836479-54836351)
               

               
               503-631, gnl|Hg17|chr20 (44129229-44129101)
               

               
               503-631, gnl|Mm7|chr2 (164750105-164749977)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	11-368, gnl\|bosTau2\|chr13 (54839321-54838982)
	11-368, gnl\|Hg17\|chr20 (44132594-44132255)
	11-368, gnl\|Mm7\|chr2 (164753828-164753489)

	503-631, gnl\|bosTau2\|chr13 (54836479-54836351)
	503-631, gnl\|Hg17\|chr20 (44129229-44129101)
	503-631, gnl\|Mm7\|chr2 (164750105-164749977)